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Job DescriptionQ46811
Confidence99.97%DateWed Jan 25 15:21:12 GMT 2012
Rank30Aligned Residues292
% Identity18%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   552.......560.........570.........580.........590. ........
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Query Sequence  PVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKN. . IIPQFRIP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN
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STT

SSSSSSSSSGGGT


SS




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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   600.........610.........620... ......630.........640.........650.....
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Query Sequence  . . . . . . . . . AELIQHDIDFVAAHGVKFEYGCSP. . . . . . . . . . . . . . . DLTIEQLKNQGFHYVLIATGTDKNSGVKLAGD
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Template Sequence  FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEID
Template Known Secondary structure  TT
SSSSS

SS
TT

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TT


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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   656...660.........670.........680.........690.........700.........710.........720. ........730.
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Query Sequence  NQNVWKSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWR. . . . EEYEEALHDG
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Template Sequence  EEKIVSSTGA. . . . . . LSLKEIPKRLTIIGGGIIGLEMGSVYSRL. . GSKVTVVEFQPQIGASMDGEVAKATQKFLKKQG
Template Known Secondary structure  TTT
......TT
SS

S

ST..T

SSSSSSSSS
TT
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   167..170...... ...180.........190.........200..... ....210.........220.........230........
 
   732.......740.........750.........760.........770.........780.........790.. .......800.........
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Query Sequence  VEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDSLITAIGEQQDTE. . ALNAMGVPLDKNGWPDV
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Template Sequence  LDFKLSTKVISAKRNDDKNVVEI. . . . . . . . . VVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVI
Template Known Secondary structure 
TTTTTT.........TTTTS
S


TTS
T

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TTS
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   239240.........250.........260. ........270.........280.........290.........300.........
 
   810.........820.........830.........840.........850.........860
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Query Sequence  DHNGETRLTDVFMIGDVQRGPSSIVAAVGTARRATDAILSRENIRSHQNDK
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Template Sequence  DDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIP
Template Known Secondary structure 
TTSB
SSTT
GGGSSS


S




TTS

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   310.........320.........330.........340.........350.........360
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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