Phyre 2 alignment of Q46811 with c1nhqA

Job Description Q46811
Confidence 99.97% Date Wed Jan 25 15:21:12 GMT 2012

Rank 32 Aligned Residues 279

% Identity 19% Template c1nhqA_

PDB info PDB header:oxidoreductase (h2o2(a)) Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.			.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.					590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure																						.	.																		.	.	.	.																																			.	.
Query SS confidence																						.	.																		.	.	.	.																																			.	.
Query Sequence	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	.	.	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	.	.	.	.	K	N	I	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P	.	.
Query Conservation																						.	.																		.	.	.	.																																			.	.
Alig confidence																						.	.																		.	.	.	.																																			.	.
Template Conservation
Template Sequence	K	V	I	V	L	G	S	S	H	G	G	Y	E	A	V	E	E	L	L	N	L	H	P	D	A	E	I	Q	W	Y	E	K	G	D	F	I	S	F	L	S	S	G	M	Q	L	Y	L	E	G	K	V	K	D	V	N	S	V	R	Y	M	T	G	E	K	M	E	S	R	G	V	N	V	F	S	N	T	E	I	T	A
Template Known Secondary structure							S	S															T	T	S							S	S	S	S	S	S	B		G	G	G						T	T	S	S			G	G	G	S	B	S									T	T						T
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

												624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.			.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	.	.	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A
Query Conservation	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence	I	Q	P	K	E	H	Q	V	T	V	K	D	L	V	S	G	E	E	R	V	E	N	Y	D	K	L	I	I	S	P	G	A	V	P	F	E	L	D	I	P	G	K	D	L	D	N	I	Y	L	M	R	G	R	Q	W	A	I	K	L	K	Q	K	T	V	D	P	E	V	N	N	V	V	V	I	G	S	G	Y	I	G
Template Known Secondary structure			T	T	T	T							T	T	T									S															S	T	T	T	T		B	T					S													T		T	T										S
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	691	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.						730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	.	.	.	.	.	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R
Query Conservation																																								.	.	.	.	.
Alig confidence											.	.																												.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	E	A	A	E	A	F	A	K	A	.	.	G	K	K	V	T	V	I	D	I	L	D	R	P	L	G	V	Y	L	D	K	E	F	T	D	V	L	T	E	E	M	E	A	N	N	I	T	I	A	T	G	E	T	V	E	R	Y	E	G	D	G	R	V	Q	K	V	V	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	.	.	T								S	S	S	S	T	T	T	T	T																T	T						S									S	S	B						.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

	766	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830											.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	.	.	.	.	.	.	.	.	.	.	S	S	I	V	A
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.																									.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.																									.
Template Sequence	.	.	.	.	.	T	D	K	N	A	Y	D	A	D	L	V	V	V	A	V	G	V	R	P	N	T	A	W	L	.	K	G	T	L	E	L	H	P	N	G	L	I	K	T	D	E	Y	M	R	T	S	E	P	D	V	F	A	V	G	D	A	T	L	I	K	Y	N	P	A	D	T	E	V	N	I	A	L	A	T	N
Template Known Secondary structure	.	.	.	.	.		S	S						S						S					S		G	G	G	.	T	T	T	S		B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	B					G	G	G	T
Template Predicted Secondary structure	.	.	.	.	.																									.
Template SS confidence
						228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	836	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure
Query SS confidence
Query Sequence	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	R	K	Q	G	R	F	A	V	K	N	L	E	E	P
Template Known Secondary structure											T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions