Job Description Q46811 Confidence 99.96% Date Wed Jan 25 15:21:12 GMT 2012 Rank 55 Aligned Residues 278 % Identity 23% Template c1lpfB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.																																				.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	P	Q	F
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	V	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	L	K	T	A	C	I	E	K	Y	I	G	K	E	G	K	V	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	D	S	S	Y	K	Y	H	E	A	K	E	A	F	K	V	H	G	I	E	A	K	G	V	T
Template Known Secondary structure									S														T										B		S	S	S	S	B		T	T							S																				T	S	G	G	G	T				S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.																					.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	E	Y	G	C	S	P	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	V	P	A	M	V	A	R	K	A	N	I	V	K	N	L	T	G	G	I	A	T	L	F	K	A	N	G	V	T	S	F	E	G	H	G	K	L	L	A	N	K	Q	V	E	V	T	G	L	D	G	K	T	Q	V	L	E	A	E	N	V	I	I	A	S	G	S	R	P	V	E	I	P	P	A	P	L	S	D
Template Known Secondary structure																														T												G	G	G							T	T	S																					B	T	T	B				T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.					730	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	.	.	.	.	D	G	V
Query Conservation																																																																											.	.	.	.
Alig confidence											.	.	.	.	.	.																														.	.																												.	.	.	.
Template Conservation											.	.	.	.	.	.																														.	.
Template Sequence		D	I	I	V	D	S	T	G	A	.	.	.	.	.	.	L	E	F	Q	A	V	P	K	K	L	G	V	I	G	A	G	V	I	G	L	E	L	G	S	V	W	A	R	L	.	.	G	A	E	V	T	V	L	E	A	L	D	K	F	L	P	A	A	D	E	Q	I	A	K	E	A	L	K	V	L	T	K	Q	G	L
Template Known Secondary structure		T	T								.	.	.	.	.	.	T	T		S	S			S								S													T	.	.	T								S	S	S	S	S	S	T	T	S															T	T
Template Predicted Secondary structure											.	.	.	.	.	.																														.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.							.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.			.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	L	.	.	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D
Query Conservation																																																																.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	R	L	G	A	R	V	T	A	S	E	V	K	K	K	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	T	F	T	D	A	N	G	E	Q	K	E	T	F	D	K	L	I	V	A	V	G	R	R	P	V	T	T	D	L	L	A	A	D	S	G	V	T	L	D	E	R	G	F	I	Y	V	D
Template Known Secondary structure					T	T										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.							S	S								S	S					S							T	T	T	B		T	T	S				B		T	T	S		B
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.														.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		811	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	H	C	K	T	S	V	P	G	V	F	A	I	G	D	V	V	R	G	A	M	L	A	H	K	A	S	E	E	G	V	M	V	A	E	R	I	A	G	H
Template Known Secondary structure		T	T		B		S	S	T	T					G	G	G	S	S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions