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Job DescriptionQ46811
Confidence99.96%DateWed Jan 25 15:21:12 GMT 2012
Rank55Aligned Residues278
% Identity23%Templatec1lpfB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   552.......560.........570.........580.........590. .....
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Query Sequence  PVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IIPQF
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Template Sequence  DVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHGIEAKGVT
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B
SSSSB
TTSTSGGGT


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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   597..600.........610..... ....620.........630.........640.........650......
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Query Sequence  RIPAELIQHDIDFVAAHGV. . . . . . . . . . . . . . . . . . . . KFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDN
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Template Sequence  IDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSD
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TGGGTTS





BTTB


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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   657..660.........670.........680.........690.........700.........710.........720......... 730..
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Query Sequence  QNVWKSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWREEYEEALH. . . . DGV
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Template Sequence  DIIVDSTGA. . . . . . LEFQAVPKKLGVIGAGVIGLELGSVWARL. . GAEVTVLEALDKFLPAADEQIAKEALKVLTKQGL
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   165....170... ......180.........190.........200.. .......210.........220.........230......
 
   733......740.........750.........760.........770.........780.........790.... .....800.........810
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Query Sequence  EFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDSLITAIGEQQDTEAL. . NAMGVPLDKNGWPDVD
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Template Sequence  NIRLGARVTASEVKKKQV. . . . . . . . . . . . . TVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD
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TT.............
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   237..240.........250.... .....260.........270.........280.........290.........300...
 
   811........820.........830.........840.........850
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Query Sequence  HNGETRLTDVFMIGDVQRGPSSIVAAVGTARRATDAILSR
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Template Sequence  DHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGH
Template Known Secondary structure  TT
B
SSTT
GGGSSS


TT
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   304.....310.........320.........330.........340...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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