Job Description Q46811 Confidence 99.97% Date Wed Jan 25 15:21:12 GMT 2012 Rank 35 Aligned Residues 287 % Identity 20% Template c1ebdB_ PDB info PDB header:complex (oxidoreductase/transferase) Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase Resolution 2.60 Å

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		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	I	I	P	Q	F	R	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	L	V	V	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	Q	K	V	T	I	V	E	K	G	N	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	I	S	A	S	H	R	Y	E	Q	A	K	H	S	E	E	M	G	I	K	A	E	N	V	T	I	D	F	A	K	V	Q	E
Template Known Secondary structure		S							S													T	T								S	S		T	T							S																			T		G	G	G	T					S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
								600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.									.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F
Query Conservation		.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																									.	.	.	.	.	.	.	.																						.
Template Conservation																																																													.
Template Sequence		W	K	A	S	V	V	K	K	L	T	G	G	V	E	G	L	L	K	G	N	K	V	E	I	V	K	G	E	A	Y	F	V	D	A	N	T	V	R	V	V	N	G	D	S	A	Q	T	Y	T	F	K	N	A	I	I	A	T	G	S	.	R	P	I	E	L	P	N	F	K	F	S	N	R	I	L	D	S	T	G	A
Template Known Secondary structure																					T	T						S							T	T							T	T								S									.						T	T				S	S	S
Template Predicted Secondary structure																																																													.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.					.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	.	.	.	.	Y	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E
Query Conservation																																																												.	.	.	.
Alig confidence		.	.	.	.	.	.																														.	.																						.	.	.	.
Template Conservation		.	.	.	.	.	.																														.	.
Template Sequence		.	.	.	.	.	.	L	N	L	G	E	V	P	K	S	L	V	V	I	G	G	G	Y	I	G	I	E	L	G	T	A	Y	A	N	F	.	.	G	T	K	V	T	I	L	E	G	A	G	E	I	L	S	G	F	E	K	Q	M	A	A	I	I	K	K	R	L	K	K	K	G	V	E	V	V	T	N	A	L	A	K
Template Known Secondary structure		.	.	.	.	.	.		T		S	S			S								S														.	.	T								S	S	S	S	S	S	T	T	S															T	T						S
Template Predicted Secondary structure		.	.	.	.	.	.																														.	.
Template SS confidence
								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		742	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.			.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	.	.	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	R	L	T	D
Query Conservation																																																						.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	E	E	R	E	D	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	T	Y	E	A	N	G	E	T	K	T	I	D	A	D	Y	V	L	V	T	V	G	R	R	P	N	T	D	E	L	G	L	E	Q	I	G	I	K	M	T	N	R	G	L	I	E	V	D	Q	Q	C	R	T	S	V	P	N
Template Known Secondary structure							S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.							T	T								S						S					S		T	T	S	S					T			B		T	T	S		B				T	T		B		S	S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250														.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	M	I	G	D	V	Q	R	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R	E	N	I	R	S	H	Q	N	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	A	I	G	D	I	V	P	G	P	A	L	A	H	K	A	S	Y	E	G	K	V	A	A	E	A	I	A	G	H	P	S	A	V	D	Y	V	A	I	P
Template Known Secondary structure						G	G	G	S	S	S																				T								S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions