Job Description Q46811 Confidence 100.00% Date Wed Jan 25 15:21:12 GMT 2012 Rank 10 Aligned Residues 306 % Identity 18% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.			.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		W	H	K	P	A	G	S	G	S	R	H	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	.	.	I	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E
Query Conservation																																																					.	.
Alig confidence																																																					.	.
Template Conservation
Template Sequence		P	E	K	F	R	Q	T	K	N	K	D	S	V	L	I	V	G	A	G	P	S	G	S	E	A	A	R	V	L	M	E	S	G	Y	T	V	H	L	T	D	T	A	E	K	I	G	G	H	L	N	Q	V	A	A	L	P	G	L	G	E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	K	K	N	K
Template Known Secondary structure		T	T	B					S	S										S													T	T								S	S	S	S	T	T	T	T					T	T	S	T	T		G	G	G	G																T		T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		619	620	.	.	.					.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.											.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
Predicted Secondary structure							.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	C	S	P	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	.	.	.	.	.	.	.	.	.	.	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V
Query Conservation							.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.
Template Sequence		E	S	Q	L	A	L	G	Q	K	P	M	T	A	D	D	V	L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	L	T	H	D	P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	.	.	.	.	.	G	K	K	K	I	G	K	R	V	V	I	L
Template Known Secondary structure		T						S											T	S			S												S	S				T	T	T	S	S			T	T			T	T	S	T	T										.	.	.	.	.	T		S				S
Template Predicted Secondary structure																																																																	.	.	.	.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.						.	.	.	.	.	.	.	530	.	.	.	.
		685	.			.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.					.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.
Predicted Secondary structure				.	.																												.	.	.	.																																											.	.	.
Query SS confidence				.	.																												.	.	.	.																																											.	.	.
Query Sequence		G	A	.	.	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	.	.	.	.	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	.	.	.
Query Conservation				.	.																												.	.	.	.																																											.	.	.
Alig confidence				.	.															.	.												.	.	.	.																																											.	.	.
Template Conservation																				.	.
Template Sequence		N	A	D	T	Y	F	M	A	P	S	L	A	E	K	L	A	T	A	.	.	G	H	E	V	T	I	V	S	G	V	H	L	A	N	Y	M	H	F	T	L	E	Y	P	N	M	M	R	R	L	H	E	L	H	V	E	E	L	G	D	H	F	C	S	R	I	E	P	G	R	M	E	I	Y	N	I	W	G	D	G	S
Template Known Secondary structure						S	S												T	.	.	T								S	S		T	T	T					T	T												T	T						S								T	T							T	T		S		S
Template Predicted Secondary structure																				.	.
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.			.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	S	S	I	V	A
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.																					.
Template Conservation																																															.	.	.	.	.	.	.	.																					.
Template Sequence		K	R	T	Y	R	G	P	G	V	S	P	R	D	A	N	T	S	H	R	W	I	E	F	D	S	L	V	L	V	T	G	R	H	S	E	C	T	L	W	N	E	L	K	A	R	.	.	.	.	.	.	.	.	E	S	E	W	A	E	N	D	I	K	G	I	Y	L	I	G	D	A	E	A	.	P	R	L	I	A	D
Template Known Secondary structure								T	T	S		S	S												S						S															T	.	.	.	.	.	.	.	.	G	G	G	T	G	G	G	T								G	G	G	T	S	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.																					.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.									.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.		.	.	680	.	.	.
		836	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	T	A	R	R	A	T	D	A	I	L	S	R	E	N	I	R	S	H	Q	N	D	K	Y	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	F	T	G	H	R	V	A	R	E	I	E	E	A	N	P	Q	I	A	I	P	Y	K	R	E	T
Template Known Secondary structure												T	T	T	S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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