Job Description P0ACM5 Confidence 100.00% Date Thu Jan 5 11:18:32 GMT 2012 Rank 5 Aligned Residues 216 % Identity 25% Template c2wv0H_ PDB info PDB header:transcription Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa; PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis Resolution 2.40 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	A	A	D	N	T	P	L	Y	I	K	F	A	E	T	V	K	N	A	V	R	S	G	V	L	E	H	G	N	I	L	P	G	E	R	D	L	S	Q	L	T	G	V	S	R	I	T	V	R	K	A	M	Q	A	L	E	E	E	G	V	V	T	R	S	R	G	Y	G	T	Q	I	N	N	I	F	E	Y	S
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.																												.	.	.
Template Sequence		N	I	N	K	Q	S	P	I	P	I	Y	Y	Q	I	M	E	Q	L	K	T	Q	I	K	N	G	E	L	Q	P	D	M	P	L	P	S	E	R	E	Y	A	.	.	.	.	.	.	.	.	E	Q	R	Q	A	L	S	N	L	V	N	E	G	L	L	Y	R	L	T	F	V	S	K	P	K	M	E	.	.	.	Q	A
Template Known Secondary structure					T	T	S	S	S																	T	S	S		T	T		B									.	.	.	.	.	.	.	.											T	T	T	S													S	.	.	.	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.																												.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		L	K	E	A	R	G	F	S	Q	Q	V	V	L	R	G	K	K	P	D	T	L	W	V	N	K	R	V	V	K	C	P	E	E	V	A	Q	Q	L	A	V	E	A	G	S	D	V	F	L	L	K	R	I	R	Y	V	D	E	E	A	V	S	I	E	E	S	W	V	P	A	H	L	I	H	D	V	.	.	D	A	I
Query Conservation																																																																													.	.
Alig confidence																																									.	.	.	.	.	.																															.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		L	Q	G	L	T	S	F	T	E	D	M	K	S	R	G	M	T	P	G	S	R	L	I	D	Y	Q	L	I	D	S	T	E	E	L	A	A	I	L	S	.	.	.	.	.	.	I	H	K	I	T	R	V	R	L	A	N	D	I	P	M	A	I	E	S	S	H	I	P	F	E	L	A	G	E	L	N	E	S	H	F
Template Known Secondary structure		T	S	S										T	T	T																									.	.	.	.	.	.											T	T																	S			T	T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		173	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	I	S	L	Y	D	Y	F	.	R	S	Q	H	I	Y	P	Q	R	T	R	S	R	V	S	A	R	M	P	D	A	E	F	Q	S	H	I	Q	L	D	S	K	I	P	V	L	V	I	K	Q	V	A	L	D	Q	Q	Q	R	P	I	E	Y	S	I	S	H	C	R	S	D	L	Y	V	F	V	C	E
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		Q	S	S	I	Y	D	H	I	E	R	Y	N	S	I	P	I	S	R	A	K	Q	E	L	E	P	S	A	A	T	T	E	E	A	N	I	L	G	I	Q	K	G	A	P	V	L	L	I	K	R	T	T	Y	L	Q	N	G	T	A	F	E	H	A	K	S	V	Y	R	G	D	R	Y	T	F	V	H	Y
Template Known Secondary structure		T	S										T																									T	S		T	T													T	T	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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