Job Description P0ACM5 Confidence 36.72% Date Thu Jan 5 11:18:32 GMT 2012 Rank 447 Aligned Residues 69 % Identity 17% Template c1u5tB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																				.	.	.	.		.	.	.	.	.																			.	.	.
Query SS confidence																.	.	.	.	.																				.	.	.	.		.	.	.	.	.																			.	.	.
Query Sequence		Y	I	K	F	A	E	T	V	K	N	A	V	R	S	.	.	.	.	.	G	V	L	E	H	G	N	I	L	P	G	E	R	D	L	S	Q	L	T	.	.	.	.	G	.	.	.	.	.	V	S	R	I	T	V	R	K	A	M	Q	A	L	E	E	E	G	V	.	.	.	V	T	R	S	R	G	Y	G	T	Q	I
Query Conservation																.	.	.	.	.																				.	.	.	.		.	.	.	.	.																			.	.	.
Alig confidence																.	.	.	.	.										.										.	.	.	.		.	.	.	.	.																			.	.	.
Template Conservation																														.
Template Sequence		L	D	E	I	A	R	E	I	Y	E	F	T	L	S	E	F	K	D	L	N	S	D	T	N	Y	M	I	I	.	T	L	V	D	L	Y	A	M	Y	N	K	S	M	R	I	G	T	G	L	I	S	P	M	E	M	R	E	A	C	E	R	F	E	H	L	G	L	N	E	L	K	L	V	K	V	N	K	R	I	L	C
Template Known Secondary structure															T	T	T	T	T	S	S	S								.		T	T									T	T	T	S	S	S													T	T	T	G	G	G	T			S							T	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		88	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	I	F	E	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	S	E	K	F	D
Template Known Secondary structure				S	S		S
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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