Job Description P0A832 Confidence 100.00% Date Thu Jan 5 11:06:45 GMT 2012 Rank 2 Aligned Residues 123 % Identity 50% Template c1p6vC_ PDB info PDB header:rna binding protein/rna Chain: C: PDB Molecule:ssra-binding protein; PDBTitle: crystal structure of the trna domain of transfer-messenger2 rna in complex with smpb Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		P	G	S	A	T	I	A	L	N	K	R	A	R	H	E	Y	F	I	E	E	E	F	E	A	G	L	A	L	Q	G	W	E	V	K	S	L	R	A	.	G	K	A	N	I	S	D	S	Y	V	L	L	R	D	G	E	A	F	L	F	G	A	N	I	T	P	M	A	V	A	S	T	H	V	V	C	D	P	T	R	T
Query Conservation																																								.
Alig confidence																																								.																															.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		D	K	I	I	P	I	A	E	N	K	E	A	K	A	K	Y	D	I	L	E	T	Y	E	A	G	I	V	L	K	G	S	E	V	K	S	L	R	E	K	G	T	V	S	F	K	D	S	F	V	R	I	E	N	G	E	A	W	L	Y	N	L	Y	I	A	P	Y	K	H	A	.	.	.	.	N	H	D	P	L	R	K
Template Known Secondary structure															T	T											B																			S	S							S	S	S												S			.	.	.	.				T	T
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	L	L	L	N	Q	R	E	L	D	S	L	Y	G	R	V	N	R	E	G	Y	T	V	V	A	L	S	L	Y	W	K	N	A	W	C	K	V	K	I	G	V	A	K	G	K	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	L	L	L	H	K	R	E	I	M	R	L	Y	G	K	V	Q	E	K	G	Y	T	I	I	P	L	K	L	Y	W	K	N	N	K	V	K	V	L	I	A	L	A	K	G	K	K	L
Template Known Secondary structure				B																	T			B										S	S									B
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions