Job Description P0A832 Confidence 100.00% Date Thu Jan 5 11:06:45 GMT 2012 Rank 3 Aligned Residues 121 % Identity 46% Template c1j1hA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:small protein b; PDBTitle: solution structure of a tmrna-binding protein, smpb, from2 thermus thermophilus Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	I	A	L	N	K	R	A	R	H	E	Y	F	I	E	E	E	F	E	A	G	L	A	L	Q	G	W	E	V	K	S	L	R	A	G	K	A	N	I	S	D	S	Y	V	L	L	R	D	G	E	A	F	L	F	G	A	N	I	T	P	M	A	V	A	S	T	H	V	V	C	D	P	T	R	T	R	K	L	L
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		A	P	V	L	E	N	R	R	A	R	H	D	Y	E	I	L	E	T	Y	E	A	G	I	A	L	K	G	T	E	V	K	S	L	R	A	G	K	V	D	F	T	G	S	F	A	R	F	E	D	G	E	L	Y	L	E	N	L	Y	I	A	P	Y	E	K	G	S	.	Y	A	N	V	D	P	R	R	K	R	K	L	L
Template Known Secondary structure				S	S								T			B	S	S										T	T							T						S	S							S	S						S					S	S		S	S		.		S					S			S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		L	N	Q	R	E	L	D	S	L	Y	G	R	V	N	R	E	G	Y	T	V	V	A	L	S	L	Y	W	.	K	N	A	W	C	K	V	K	I	G	V	A	K	G	K
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		L	H	K	H	E	L	R	R	L	L	G	K	V	E	Q	K	G	L	T	L	V	P	L	K	I	Y	F	N	E	R	G	Y	A	K	V	L	L	G	L	A	R	G	K
Template Known Secondary structure		B													T	T	T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions