Job Description P30147 Confidence 100.00% Date Thu Jan 5 11:46:08 GMT 2012 Rank 6 Aligned Residues 254 % Identity 12% Template c3qxbB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																								.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	F	S	A	N	L	S	M	L	F	G	E	Y	D	F	L	A	.	.	R	F	E	K	A	A	Q	C	G	F	R	G	V	E	F	M	F	P	Y	D	Y	D	I	.	.	.	.	.	.	.	.	.	.	E	E	L	K	H	V	L	A	S	N	K	L	E	H	T	L	H	N	L	P	A	G	D	W	A	A	G
Query Conservation																				.	.																								.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	K	L	G	V	N	L	C	F	A	V	K	R	W	L	E	P	D	R	L	A	G	L	V	R	D	D	L	G	L	E	Y	V	Q	Y	T	Y	D	L	T	D	P	W	W	P	D	I	E	R	D	R	R	A	I	A	Y	A	K	A	F	R	K	A	G	L	T	I	E	S	T	F	G	G	L	A	S	Y	T	Y	N
Template Known Secondary structure								G	G	G	G	T	T	T	S		S											T	T									T	T	T	S		T	T	S																			T	T														T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.
Predicted Secondary structure																																													.	.	.	.	.																												.
Query SS confidence																																													.	.	.	.	.																												.
Query Sequence		E	R	G	I	A	C	I	P	G	R	E	E	E	F	R	D	G	V	A	A	A	I	R	Y	A	R	A	L	G	N	K	K	I	N	C	L	V	G	K	T	P	A	G	.	.	.	.	.	F	S	S	E	Q	I	H	A	T	L	V	E	N	L	R	Y	A	A	N	M	L	M	K	E	D	I	L	.	L	L	I	E
Query Conservation																																													.	.	.	.	.																												.
Alig confidence			.																																										.	.	.	.	.																												.
Template Conservation			.
Template Sequence		H	.	F	L	A	P	T	L	E	L	Q	S	L	G	Y	Q	H	L	K	R	A	I	D	X	T	A	A	X	E	V	P	A	T	G	X	P	F	G	S	Y	S	A	A	D	A	L	N	P	A	R	R	E	E	I	Y	A	I	A	R	D	X	W	I	E	L	A	A	Y	A	K	R	Q	G	L	S	X	L	Y	V	E
Template Known Secondary structure		B	.	T	T		S	S																					T	T		S							B	B							T																											T
Template Predicted Secondary structure			.
Template SS confidence
		81		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.
Predicted Secondary structure																																												.	.	.	.	.																										.	.	.	.	.
Query SS confidence																																												.	.	.	.	.																										.	.	.	.	.
Query Sequence		P	I	N	H	F	D	I	P	G	F	H	L	T	G	T	R	Q	A	L	K	L	I	D	D	V	G	C	C	N	L	K	I	Q	Y	D	I	Y	H	M	Q	R	M	.	.	.	.	.	E	G	E	L	T	N	T	M	T	Q	W	A	D	K	I	G	H	L	Q	I	A	D	N	P	H	.	.	.	.	.	R	G	E
Query Conservation																																												.	.	.	.	.																										.	.	.	.	.
Alig confidence																																												.	.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		P	V	P	L	A	T	E	F	P	S	S	A	A	D	A	A	R	L	X	A	D	L	D	G	R	T	E	I	P	V	R	L	L	V	D	W	G	H	A	L	F	E	P	L	F	G	P	E	A	D	X	D	H	W	X	D	L	C	Q	P	W	I	A	A	Y	H	I	Q	Q	T	D	G	Q	L	D	R	H	W	S	F
Template Known Secondary structure				S		T	T	B	S	S		S												T	T	T	S	S	S												T						G	G	G		S									G	G	G								B			S	S	S				B		T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.										.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																									.									.	.	.	.	.	.	.	.	.
Query SS confidence																									.									.	.	.	.	.	.	.	.	.
Query Sequence		P	G	T	G	E	I	N	Y	D	Y	L	F	K	V	I	E	N	S	D	Y	N	G	W	.	V	G	C	E	Y	K	P	Q	.	.	.	.	.	.	.	.	.	T	T	T	E	A	G	L	R	W	M	D	P
Query Conservation																									.									.	.	.	.	.	.	.	.	.
Alig confidence																									.									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	P	G	V	V	T	P	Q	R	L	Q	D	F	W	D	K	Y	A	L	T	D	Q	T	F	F	A	E	I	L	Y	P	F	E	A	R	D	E	D	V	L	A	D	X	I	A	S	V	K	A	L	K	A
Template Known Secondary structure		T	S		S	S													T	T		S	S											T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions