Job Description P30147 Confidence 97.66% Date Thu Jan 5 11:46:08 GMT 2012 Rank 44 Aligned Residues 192 % Identity 11% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		A	R	F	E	K	A	A	Q	C	G	F	R	G	V	E	F	M	F	P	Y	D	.	.	.	.	.	.	.	Y	D	I	E	E	L	K	H	V	L	A	S	N	K	L	E	H	T	L	H	N	L	P	A	G	D	W	A	A	G	E	R	G	I	A	C	I	P	G	R	E	E	E	F	R	D	G	V	A	A	A	I
Query Conservation																							.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	V	D	D	L	S	A	A	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	G	V	T	Y	A	A	L	A	P	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	F
Template Known Secondary structure										T	T		S								S		T	T	T		G	G	G	T	T								S				T	T	S								S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.																									.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																																								.	.	.
Query SS confidence																						.	.																																																								.	.	.
Query Sequence		R	Y	A	R	A	L	G	N	K	K	I	N	C	L	V	G	K	T	P	A	.	.	G	F	S	S	E	Q	I	H	A	T	L	V	E	N	L	R	Y	A	A	N	M	L	M	K	E	D	I	L	L	L	I	E	P	I	N	H	F	D	I	P	G	F	H	L	T	G	T	R	Q	A	L	K	L	I	D	.	.	.
Query Conservation																						.	.																																																								.	.	.
Alig confidence																						.	.																																																								.	.	.
Template Conservation
Template Sequence		E	A	A	L	E	S	G	V	K	E	V	A	V	F	A	A	A	S	E	A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	G	Y	I	S	C	V	L	G	C	P	Y	D	G	D	V	D	P	R	Q	V	A	W	V	A	R	E	L	Q
Template Known Secondary structure							T	T										S										S	S																			T	T										T	T		B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.																					.	.	.	.									.
Predicted Secondary structure																						.															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Query SS confidence																						.															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Query Sequence		D	V	G	C	C	N	L	K	I	Q	Y	D	I	Y	H	M	Q	R	M	E	.	G	E	L	T	N	T	M	T	Q	W	A	D	K	I	.	G	H	L	Q	I	A	D	N	P	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	P	G	.	.	.	.	.	.	.	.	T
Query Conservation																						.															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Alig confidence																						.															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	M	G	C	Y	E	V	S	L	G	D	T	I	G	V	G	T	A	G	A	T	R	R	L	I	E	A	V	A	S	E	V	P	R	E	R	L	A	G	H	F	H	D	T	Y	G	Q	A	L	A	N	I	Y	A	S	L	L	E	G	I	A	V	F	D	S	S	V	A	G	L	G	G	C	P	Y	A	K	G	A	T
Template Known Secondary structure			T	T		S							S	S	S															T	T	T	S		G	G	G						B		T	T	S												T	T							B	G	G	G			B		G	G	G	T	T		B
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	I	N	Y	D	Y	L	F	K	V	I	E	N	S	D	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	V	A	S	E	D	V	L	Y	L	L	N	G	L	E	I	H
Template Known Secondary structure			B		B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions