Job Description P30147 Confidence 96.38% Date Thu Jan 5 11:46:08 GMT 2012 Rank 54 Aligned Residues 190 % Identity 11% Template c2cw6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria Resolution 2.10 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.
Query Sequence		A	R	F	E	K	A	A	Q	C	G	F	R	G	V	E	F	M	F	P	Y	D	Y	D	.	.	.	.	.	.	.	I	E	E	L	K	H	V	L	A	S	N	K	L	E	H	T	L	H	N	L	P	A	G	D	W	A	A	G	E	R	G	I	A	C	I	P	G	R	E	E	E	F	R	D	G	V	A	A	A	I
Query Conservation																									.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	I	D	M	L	S	E	A	G	L	S	V	I	E	T	T	S	F	V	S	P	K	W	V	P	Q	M	G	D	H	T	E	V	L	K	G	I	Q	K	F	P	G	I	N	Y	P	V	L	T	P	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	F
Template Known Secondary structure										T	T		S										T	T	T		G	G	G	T	T								S				T	T		B							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																									.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.
Query SS confidence																														.	.	.	.
Query Sequence		R	Y	A	R	A	L	G	N	K	K	I	N	C	L	V	G	K	T	P	A	G	F	S	S	E	Q	I	H	.	.	.	.	A	T	L	V	E	N	L	R	Y	A	A	N	M	L	M	K	E	D	I	L	L	L	I	E	P	I	N	H	F	D	I	P	G	F	H	L	T	G	T	R	Q	A	L	K	L	I	D	D
Query Conservation																														.	.	.	.
Alig confidence																		.	.											.	.	.	.
Template Conservation																		.	.
Template Sequence		E	A	A	V	A	A	G	A	K	E	V	V	I	F	G	A	.	.	A	S	E	L	F	T	K	K	N	I	N	C	S	I	E	E	S	F	Q	R	F	D	A	I	L	K	A	A	Q	S	A	N	I	S	V	R	G	Y	V	S	C	A	L	G	C	P	Y	E	G	K	I	S	P	A	K	V	A	E	V	T	K	K
Template Known Secondary structure							T	T		S								.	.	S									T	S	S		T	T	T															T	T									S	T	T		B	T	T	T	B	S
Template Predicted Secondary structure																		.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		168	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.																					.	.	.	.
Predicted Secondary structure						.																														.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query SS confidence						.																														.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query Sequence		V	G	C	C	.	N	L	K	I	Q	Y	D	I	Y	H	M	Q	R	M	E	G	E	L	T	N	T	M	T	Q	W	A	D	K	I	.	.	.	.	G	H	L	Q	I	A	D	N	P	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	P	G	.	.	.	.	.	.	.
Query Conservation						.																														.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Alig confidence						.																														.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	S	M	G	C	Y	E	I	S	L	G	D	T	I	G	V	G	T	P	G	I	M	K	D	M	L	S	A	V	M	Q	E	V	P	L	A	A	L	A	V	H	C	H	D	T	Y	G	Q	A	L	A	N	T	L	M	A	L	Q	M	G	V	S	V	V	D	S	S	V	A	G	L	G	G	C	P	Y	A	Q	G
Template Known Secondary structure					T	T		S							T	T																			S		G	G	G						B		T	T	S												T	T							B	T	T	S					T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
			216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	G	E	I	N	Y	D	Y	L	F	K	V	I	E	N	S	D	Y	N
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	S	G	N	L	A	T	E	D	L	V	Y	M	L	E	G	L	G	I	H
Template Known Secondary structure					B		B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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