Return to main results Retrieve Phyre Job Id

Job DescriptionP07013
Confidence99.86%DateThu Jan 5 10:59:59 GMT 2012
Rank15Aligned Residues100
% Identity12%Templatec3pgzB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of a single strand binding protein (ssb) from2 bartonella henselae
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40 .........50........ .60.........70........
Predicted Secondary structure 











..



.




Query SS confidence 






































. .

















.



















Query Sequence  TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEA. . GFHRQAWCQMPVIVSGHE. NQAITHSITVGSRITVQGFI
Query Conservation   
 
 
 
 
  




 
  
  
  
 

        ..
        
 

  
  .

     
 

  
 
 
 
Alig confidence 






































..

















.



















Template Conservation 

 
 
 
 
   
    
  
       

                     
   
   
      
 

  
 
 
 
Template Sequence  LNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQL
Template Known Secondary structure 


SS


TTS

TTT





TT
Template Predicted Secondary structure 




























Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   7980.........90. ..... ...100.
Predicted Secondary structure 





........
Query SS confidence 












. . . .




. . . .




Query Sequence  SCHKAKNGLSKMV. . . . LHAEQ. . . . IELID
Query Conservation    
       
  ....
    ....

 
 
Alig confidence 












....




....




Template Conservation           
       
 
  
      
 
Template Sequence  QTRKWQDQNGNDRYTTEIVLQKYRGELQMLD
Template Known Secondary structure 
TTS

TT



Template Predicted Secondary structure 







Template SS confidence 






























   85....90.........100.........110.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions