 |
Job Description | P07013 | Confidence | 22.94% | Date | Thu Jan 5 10:59:59 GMT 2012 |
Rank | 62 | Aligned Residues | 67 |
% Identity | 12% | Template | c1gm5A_ |
PDB info |
PDB header:helicase | Chain: A: PDB Molecule:recg; |
PDBTitle: structure of recg bound to three-way dna junction
|
Resolution | 3.24 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | L | V | L | S | G | T | V | C | R | A | P | L | R | K | V | S | P | S | G | I | P | H | C | Q | F | V | L | E | H | R | S | V | Q | E | E | A | G | F | H | R | Q | A | W | C | Q | M | P | V | I | V | S | G | H | E | N | Q | A | I | T | H | S | I | T | V | G | S | R | I | T | V | Q | G | F | I | S | C | H | K | A |
Query Conservation |   |
  |
|   |
|   |
|   |
|   |   |
|
|
|
|
|   |
|   |   |
|   |   |
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |
|   |
|   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
Template Sequence |   |
K | V | T | T | Q | G | K | I | V | S | V | E | T | K | K | F | . |
. |
Q | N | M | N | I | L | T | A | V | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | D | G | L | V | H | V | P | L | K | W | F | N | Q | D | Y | L | Q | T | Y | L | K | Q | L | T | G | K | E | V | F | V | T | G | T | V | K | S | N | A | Y |
Template Known Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
| . | . | S | S |
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |
|
| S | S |
|
|  |  |  |  |  |
| S |
|
| T | T |  |  |  |  |  | T | T |
| S | S |
|  |  |  |  |  |  |  |
| S |
|
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
|
. | . | . | . | . | . | . | 190 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
  |   |
84 |
Predicted Secondary structure |   |
|
Query SS confidence |   |
|
Query Sequence |   |
K |
Query Conservation |   |
  |
Alig confidence |   |
|
Template Conservation |   |
  |
Template Sequence |   |
T |
Template Known Secondary structure |   |
T |
Template Predicted Secondary structure |   |
|
Template SS confidence |   |
|
  |   |
233 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|