Job Description P0AAA7 Confidence 100.00% Date Thu Jan 5 11:12:23 GMT 2012 Rank 1 Aligned Residues 412 % Identity 11% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		S	L	A	K	A	S	L	W	T	A	A	S	T	L	V	K	I	G	A	G	L	L	V	G	K	L	L	A	V	S	F	G	P	A	G	L	G	L	A	A	N	F	R	Q	L	I	T	V	L	G	V	L	A	G	A	G	I	F	N	G	V	T	K	Y	V	A	Q	.	.	Y	H	D	N	P	Q	Q	L	R	R	V
Query Conservation																																																																					.	.
Alig confidence																															.																								.														.	.
Template Conservation																															.																								.
Template Sequence		N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	.	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	.	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H	K	I	P	F	E
Template Known Secondary structure																															.		T	T	T	T	T	T																	.								G	G	G		T	T	S		S	S	S	S	S	S	S
Template Predicted Secondary structure																															.																								.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		V	G	T	S	S	A	M	V	L	G	F	S	T	L	M	A	L	V	F	V	L	A	A	A	P	I	S	Q	G	L	F	G	N	.	.	.	T	D	Y	Q	G	L	V	R	L	V	A	L	V	Q	M	G	I	A	W	G	N	L	L	L	A	L	M	K	G	F	R	D	A	A	G	N	A	L	S	L	I	V	G	S
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.
Template Conservation
Template Sequence		V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I	G	F	I	G	L
Template Known Secondary structure																												S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.										.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.
Query Sequence		L	I	G	V	L	A	Y	Y	V	S	Y	R	L	G	G	Y	E	G	A	L	L	G	L	A	L	I	P	A	L	V	V	I	P	A	A	I	M	L	I	.	.	.	.	.	.	.	.	.	K	R	G	V	I	P	L	S	Y	L	K	P	S	W	D	N	G	L	A	G	Q	L	S	K	F	T	L	M	A	L	I	T
Query Conservation																																									.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A
Template Known Secondary structure													T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		S	V	T	L	P	V	A	Y	I	M	M	R	K	L	L	A	A	Q	Y	S	W	D	E	V	G	I	W	Q	G	V	S	S	I	S	D	A	Y	L	Q	F	I	T	A	S	F	S	V	Y	L	L	P	T	L	S	.	.	R	L	T	E	K	R	D	I	T	R	E	V	V	K	S	L	K	F	V	L	P	A	V	A
Query Conservation																																																								.	.
Alig confidence																			.																																					.	.
Template Conservation																			.
Template Sequence		L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	.	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C
Template Known Secondary structure																T			.	S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																				.	.																																																	.
Query SS confidence																				.	.																																																	.
Query Sequence		A	A	S	F	T	V	W	L	L	R	D	F	A	I	W	L	L	L	.	.	S	N	K	F	T	A	M	R	D	L	F	A	W	Q	L	V	G	D	V	L	K	V	G	A	Y	V	F	G	Y	L	V	I	A	K	A	S	L	R	F	Y	I	L	A	E	V	S	Q	F	.	T	L	L	M	V	F	A	H	W	L	I
Query Conservation																				.	.																																																	.
Alig confidence																				.	.																																																	.
Template Conservation
Template Sequence		I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G
Template Known Secondary structure																	T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		383	.								.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		P	A	.	.	.	.	.	.	.	H	G	A	L	G	A	A	Q	A	Y	M	A	T	Y	I	V	Y	F	S	L	C	C	G	V	F	L	L	W	R	R	R	A
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S
Template Known Secondary structure					S	S	S			S																					T	G	G	G	S	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.