Job Description P0AAA7 Confidence 1.45% Date Thu Jan 5 11:12:23 GMT 2012 Rank 59 Aligned Residues 400 % Identity 11% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																							.	.	.																															.									.	.	.	.
Query SS confidence																							.	.	.																															.									.	.	.	.
Query Sequence		M	S	L	A	K	A	S	L	W	T	A	A	S	T	L	V	K	I	G	A	G	.	.	.	L	L	V	G	K	L	L	A	V	S	F	G	P	A	G	L	G	L	A	A	N	F	R	Q	L	I	T	V	L	G	.	V	L	A	G	A	G	I	F	.	.	.	.	N	G	V	T	K	Y	V	A	Q	Y	H	D	N
Query Conservation																							.	.	.																															.									.	.	.	.
Alig confidence																							.	.	.																															.									.	.	.	.
Template Conservation
Template Sequence		L	K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D
Template Known Secondary structure							B																		T	T	T	S									G	G	G																								T	T				T	T	T											S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	Q	L	R	R	V	V	G	T	S	S	A	M	V	L	G	F	S	T	L	M	A	L	V	F	V	L	A	A	A	P	I	S	Q	G	L	F	G	N	T	D	Y	Q	G	L	V	R	L	V	A	L	V	Q	M	G	I	A	W	G	N	L	L	L	A	L	M	K	G	F	R	D	A	A	G	N	A	L	S	L
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		N	I	I	T	.	.	.	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L
Template Known Secondary structure		S				.	.	.																														T	T																										T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		83	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	S	L	I	G	V	L	A	Y	Y	V	S	Y	R	L	G	G	Y	E	G	A	L	L	G	L	A	L	I	P	A	L	V	V	I	P	A	A	I	M	L	I	K	R	G	V	I	P	L	S	Y	L	K	P	S	W	D	N	G	L	A	G	Q	L	S	K	F	T	L	M	A	L	I	T	S	V	T	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V
Template Known Secondary structure																	G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	Y	I	M	M	R	K	L	L	A	A	Q	Y	S	W	D	E	V	G	I	W	Q	G	V	S	S	I	S	D	A	Y	L	Q	F	I	T	A	S	F	S	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	P	T	L	S	R	L	T	E	K	R	D	I	T	R	E	V	V	K	S
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K
Template Known Secondary structure							T	T	S								T	G	G	G																																			T	T	T											S	S			S	S			T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	F	V	L	P	A	V	A	A	A	S	F	T	V	W	L	L	R	D	F	A	I	W	L	L	L	S	N	K	F	T	A	M	R	D	L	F	A	W	Q	L	V	G	D	V	L	K	V	G	A	Y	V	F	G	Y	L	V	I	A	K	A	S	L	R	F	Y	I	L	A	E	V	S	Q	F	T	L	L	M	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	.	.	.	.	.	.	.	.	.	.	.	.	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F
Template Known Secondary structure			T																	S	.	.	.	.	.	.	.	.	.	.	.	.																											T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.													.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	H	W	L	I	P	A	H	G	A	L	G	A	A	Q	A	Y	M	A	T	Y	I	V	Y	F	S	L	C	C	G	V	F	L	L	W	R	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.