Return to main results Retrieve Phyre Job Id

Job DescriptionP03960
Confidence100.00%DateThu Jan 5 10:58:08 GMT 2012
Rank2Aligned Residues669
% Identity21%Templatec3ixzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
Resolution6.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 












Query SS confidence 















































































Query Sequence  RKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSLLTTCISIAMASGAMPGNALFSAAISGWLWITVLFANFA
Query Conservation                  
       
   
      

         
                  
   
   
      
Alig confidence 























.

































.



















Template Conservation         
 
 
      
     .           
    
                 .         

         
Template Sequence  AELLLRDGPNALRPPRGTPEYVKF. ARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTT. DDNLYLALALIAVVVVTGCF
Template Known Secondary structure  S

SS



S


S.GGGGSSTTTTS
SSS
TTTT.TTT
Template Predicted Secondary structure 












.








.

Template SS confidence 















































































   78.80.........90.........100. ........110.........120.........130..... ....140.........150.....
 
   83......90.........100.........110.........120.........130.........140.........150 .........160.
Predicted Secondary structure 





















.


Query SS confidence 



































































.










Query Sequence  EALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGG. ASVDESAITGE
Query Conservation      
         
          
 

    
    
    

 



 
  
  



  

 
 .  



 



Alig confidence 




















.






....


































.










Template Conservation        
       
      . 
 
 

....
    
    

 



 
  
  



  

 
  
 



 



Template Sequence  GYYQEFKSTNIIASFKNLVPQ. QATVIRD. . . . GDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGE
Template Known Secondary structure  STTS




TTSS
S.
T....T
STT

SS
TTSB

S
TTTTS
Template Predicted Secondary structure 


.
....



















Template SS confidence 















































































   156...160.........170...... ...180... ......190.........200.........210.........220.........230
 
   162.......170.. .......180.........190.........200.........210.........220.........230....
Predicted Secondary structure 






.......

















Query SS confidence 










. . . . . . .





























































Query Sequence  SAPVIRESGGD. . . . . . . FASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALTILLIALTIVFLL
Query Conservation 
 

 
     .......   
 


 
  
     
   
  
  


           
 
          
      
Alig confidence 










.......





























































Template Conservation 
 

 
             
 
  

 
  
     
  

  
  


           
 
          
      
Template Sequence  SEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAIL
Template Known Secondary structure 
S


SS

SSSSSS
TT
TT

TTTS





S
Template Predicted Secondary structure 
































Template SS confidence 















































































   231........240.........250.........260.........270.........280.........290.........300.........310
 
   235....240....... ..250.........260.........270.........280.........290.........300.........310..
Predicted Secondary structure  ..














Query SS confidence 












. .
































































Query Sequence  ATATLWPFSAWGG. . NAVSVTVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTI
Query Conservation               ..        
 
 
  

  
              
    



     
 

 
  
  





Alig confidence 












..
































































Template Conservation    
                    
 
    

  
              
    
  
    

 

 
  
  





Template Sequence  FGATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTL
Template Known Secondary structure  T
SSSS
TTS
SSSSTTSS

BSSST


TTTTS
Template Predicted Secondary structure 




















Template SS confidence 















































































   311........320.........330.........340.........350.........360.........370.........380.........390
 
   313......320....... ..330.........340..... ....350.......
Predicted Secondary structure 






...................





................

Query SS confidence 














. . . . . . . . . . . . . . . . . . .

















. . . . . . . . . . . . . . . .











Query Sequence  TLGNRQASEFIPAQG. . . . . . . . . . . . . . . . . . . VDEKTLADAAQLASLADE. . . . . . . . . . . . . . . . TPEGRSIVILAK
Query Conservation 
 
   
        ...................     
            ................ 
   

   
 
Alig confidence 














...................

















................











Template Conservation 
   
 
  
                             
     

  
                 
   
 

     
Template Sequence  TQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSE
Template Known Secondary structure  B





TTS





SSS
SS

S
TTSTS



B
S


SS
TTTS
BSS
Template Predicted Secondary structure 






































Template SS confidence 















































































   391........400.........410.........420.........430.........440.........450.........460.........470
 
   358 .360.........370.........380........ .390.........400....... ..410.........
Predicted Secondary structure  .


















........





.........





Query SS confidence 
.





























. . . . . . . .


















. . . . . . . . .











Query Sequence  Q. RFNLRERDVQSLHATFVPFTAQSRMSGINI. . . . . . . . DNRMIRKGSVDAIRRHVEA. . . . . . . . . NGGHFPTDVDQK
Query Conservation   .                 

 
  
  

  ........      


 
 

     .........            
Alig confidence 
.





























........


















.........











Template Conservation                      
 
  
 



               




 

  
                       
Template Sequence  LTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTA
Template Known Secondary structure  TTTS
S

S

S

SS



SSSS
S
T
SSS





Template Predicted Secondary structure 



































Template SS confidence 















































































   471........480.........490.........500.........510.........520.........530.........540.........550
 
   420.........430..... ....440.........450.........460.........470.....
Predicted Secondary structure 


........................














Query SS confidence 















. . . . . . . . . . . . . . . . . . . . . . . .







































Query Sequence  VDQVARQGATPLVVVE. . . . . . . . . . . . . . . . . . . . . . . . GSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNR
Query Conservation         
 
 
 

 ........................    

 
 
 
 

      
  
  


 
 




  
Alig confidence 















........................







































Template Conservation      
  
 


  
 
 
                   
  
 




   
 

      
  
  


 
 




  
Template Sequence  YLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHP
Template Known Secondary structure  TTT


GGG

TT



SSS

S

SS

B
SSTT
B
SS
Template Predicted Secondary structure 


























Template SS confidence 















































































   551........560.........570.........580.........590.........600.........610.........620.........630
 
   476...480......... 490.........500..
Predicted Secondary structure 




.....................................................


Query SS confidence 













. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .












Query Sequence  LTAAAIAAEAGVDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FLAEATPEAKLAL
Query Conservation   

  

   

  .....................................................
 

  

 
  
Alig confidence 













.....................................................












Template Conservation   

  

   

                             




  
  
               



 

  
  
Template Sequence  ITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVI
Template Known Secondary structure  TTS

S
BTTTT





SSSST


SB

TT

S



S

TT
Template Predicted Secondary structure 





































Template SS confidence 















































































   631........640.........650.........660.........670.........680.........690.........700.........710
 
   503......510.........520.........530...... ...540.........550.........560.........570.........580.
Predicted Secondary structure 








.





Query SS confidence 

































.












































Query Sequence  IRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMN. SGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIA
Query Conservation 
  

  
  
 




 





  






 . 

  
  





       
   
  

     
   
   
 
Alig confidence 

































.












































Template Conservation 
  

  
  
 




 

  

  







  

  
  





    
  
   
  

     
   
   
 
Template Sequence  VESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLT
Template Known Secondary structure  TTT


SGGGTTTTTSSS
TTSS
TT
S
SS

TT
Template Predicted Secondary structure 

















Template SS confidence 















































































   711........720.........730.........740.........750.........760.........770.........780.........790
 
   582.......590.........600.........610.........620.........630.........640.........650.........660.
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  NDVAKYFAIIPAAFAATYPQLNALNIMCLHSPDSAILSAVIFNALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGG
Query Conservation   

                 
   


 
           
                                       
Alig confidence 















































































Template Conservation       
              
   
 
  

         
        
    
                         
Template Sequence  KNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQ
Template Known Secondary structure  TS



SS
TTSSSSSSGGG


SS
STTS



TTTS
SS
TTSSTT
Template Predicted Secondary structure 
























Template SS confidence 















































































   791........800.........810.........820.........830.........840.........850.........860.........870
 
   662.......670.........680.
Predicted Secondary structure 

Query SS confidence 



















Query Sequence  LLVPFIGIKVIDLLLTVCGL
Query Conservation      
             
 
Alig confidence 





...










Template Conservation        ...           
Template Sequence  SFAGFT. . . DYFTAMAQEGW
Template Known Secondary structure  ...TSS
Template Predicted Secondary structure  ...


Template SS confidence 



















   871..... ...880.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions