Job Description P03960 Confidence 21.73% Date Thu Jan 5 10:58:08 GMT 2012 Rank 410 Aligned Residues 126 % Identity 17% Template c3dnfB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway Resolution 1.65 Å

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		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.																																		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	V	D	Q	K	V	D	Q	V	A	R	Q	G	A	T	P	L	V	V	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	R	V	L	G	V	I	A	L	K	D	I	V	K	G	G	I	K	E	R	F	A	Q	L
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	V	H	E	A	V	C	Q	L	T	R	E	G	Y	F	V	V	L	V	G	E	K	N	H	P	E	V	I	G	T	L	G	Y	L	R	A	C	N	G	K	G	I	V	V	E	T	L	E	D	I	G	E	A	L	K	H	E	R	V	G	I	V	A	Q	T	T	Q	N	E	E	F	F	K	E	V	V	G	E	I
Template Known Secondary structure														T	T							S		T	T														T	T							S	S	G	G	G	G	G	G	G	G	G	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.							470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.		.	.	530	.	.
Predicted Secondary structure											.	.	.	.	.	.																																																					.							.
Query SS confidence											.	.	.	.	.	.																																																					.							.
Query Sequence		R	K	M	G	I	K	T	V	M	.	.	.	.	.	.	I	T	G	D	N	R	L	T	A	A	A	I	A	A	E	A	G	V	D	D	F	L	A	E	A	T	P	E	A	K	L	A	L	I	R	Q	Y	Q	A	E	G	R	L	V	A	M	T	G	D	G	T	N	.	D	A	P	A	L	A	.	Q	A	D	V	A
Query Conservation											.	.	.	.	.	.																																																					.							.
Alig confidence											.	.	.	.	.	.																																																					.							.
Template Conservation
Template Sequence		A	L	W	V	K	E	V	K	V	I	N	T	I	C	N	A	T	S	L	R	Q	E	S	V	K	K	L	A	P	E	V	D	V	M	I	I	I	G	G	K	N	S	G	N	T	R	R	L	Y	Y	I	S	K	E	L	N	P	N	T	Y	H	I	E	T	A	E	E	L	Q	P	E	W	F	R	G	V	K	R	V	G
Template Known Secondary structure					S	S										T													G	G	G	S	S						S		T	T																T	T					S	S	G	G	G			G	G	G	G	T	T		S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		533	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	N	S	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	A	G	A	S	T
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions