Job Description P03960 Confidence 100.00% Date Thu Jan 5 10:58:08 GMT 2012 Rank 7 Aligned Residues 615 % Identity 22% Template c3b8cB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump Resolution 3.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	Q	L	A	L	F	E	P	T	L	V	V	Q	A	L	K	E	A	V	K	K	L	N	P	Q	A	Q	W	R	N	P	V	M	F	I	V	W	I	G	S	L	L	T	T	C	I	S	I	A	M	A	S	G	A	M	P	G	N	A	L	F	S	A	A	I	S	G	W	L	W	I	T	V	L	F	A	N	F	A
Query Conservation
Alig confidence																									.	.																						.	.	.	.	.	.	.
Template Conservation																									.	.																						.	.	.	.	.	.	.
Template Sequence		E	D	R	I	Q	I	F	G	P	N	K	L	E	E	K	K	E	S	K	L	L	K	F	.	.	L	G	F	M	W	N	P	L	S	W	V	M	E	M	A	A	I	M	A	I	A	.	.	.	.	.	.	.	L	A	N	G	D	G	R	P	P	D	W	Q	D	F	V	G	I	I	C	L	L	V	I	N	S	T	I
Template Known Secondary structure					S	S	S			S			T	T	T	T				T	T	S	S	T	.	.	T	S				G	G	G	S	S								G	G	G	G	.	.	.	.	.	.	.	S	S			T	T	S		S			T	T								T	T	T	T	T	T	T
Template Predicted Secondary structure																									.	.																						.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.								.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		E	A	L	A	E	G	R	S	K	A	Q	A	N	S	L	K	G	V	K	K	T	A	F	A	R	K	L	R	E	P	K	Y	G	A	A	A	D	K	V	P	A	D	Q	L	R	K	G	D	I	V	L	V	E	A	G	D	I	I	P	C	D	G	E	V	I	E	G	G	A	.	S	V	D	E	S	A	I	T	G	E
Query Conservation																																																																							.
Alig confidence																							.								.	.	.	.																																					.
Template Conservation																							.								.	.	.	.
Template Sequence		S	F	I	E	E	N	N	A	G	N	A	A	A	A	L	M	A	G	L	A	P	.	K	T	K	V	L	R	D	.	.	.	.	G	K	W	S	E	Q	E	A	A	I	L	V	P	G	D	I	V	S	I	K	L	G	D	I	I	P	A	D	A	R	L	L	E	G	D	P	L	K	V	D	Q	S	A	L	T	G	E
Template Known Secondary structure		T	T	T	T	T	T	T	T	T	T					T	T	T	S		S		.							S	.	.	.	.	S		S					T	T	T	T		T	T	S	B					S	S				S	S		B					S	S		B						S	T	T
Template Predicted Secondary structure																							.								.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	P	V	I	R	E	S	G	G	D	F	A	S	V	T	G	G	T	R	I	L	S	D	W	L	V	I	E	C	S	V	N	P	G	E	T	F	L	D	R	M	I	A	M	V	E	G	A	Q	R	R	K	T	P	N	E	I	A	L	T	I	L	L	I	A	L	T	I	V	F	L	L	A	T	A	T	L	W	P
Query Conservation
Alig confidence												.	.	.																																					.
Template Conservation												.	.	.																																					.
Template Sequence		S	L	P	V	T	K	H	P	G	Q	.	.	.	E	V	F	S	G	S	T	C	K	Q	G	E	I	E	A	V	V	I	A	T	G	V	H	T	F	F	G	K	A	A	H	L	V	D	S	T	.	N	Q	V	G	H	F	Q	K	V	L	T	A	I	G	N	F	C	I	C	S	I	A	I	G	M	V	I	E	I	I
Template Known Secondary structure		S	S				B	S	S			.	.	.	B			S						S						B			S		T	T	S	S	S	S	T	T				S			S		.	S			S	T	T	T	T	T	T																			S	T
Template Predicted Secondary structure												.	.	.																																					.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		242	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		F	S	A	W	G	.	.	.	G	N	A	V	S	V	T	V	L	V	A	L	L	V	C	L	I	P	T	T	I	G	G	L	L	S	A	I	G	V	A	G	M	S	R	M	L	G	A	N	V	I	A	T	S	G	R	A	V	E	A	A	G	D	V	D	V	L	L	L	D	K	T	G	T	I	T	L	G	N	R	Q
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence		V	M	Y	P	I	Q	R	R	K	Y	R	D	G	I	D	N	L	L	V	L	L	I	G	G	I	P	I	A	M	P	T	V	L	S	V	T	M	A	I	G	S	H	R	L	S	Q	Q	G	A	I	T	K	R	M	T	A	I	E	E	M	A	G	M	D	V	L	C	S	D	K	T	G	T	L	T	L	N	K	L	S
Template Known Secondary structure		T	T	T	T	T	T		S		S	T	T									T	T	T	T			S	S	T	T	T					T	T	T							T	T	T	S	B			S	S	G	G	G					T	T													S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		319	320	.	.	.	.					.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.						.
Predicted Secondary structure								.	.	.	.																																																																	.	.	.	.	.
Query SS confidence								.	.	.	.																																																																	.	.	.	.	.
Query Sequence		A	S	E	F	I	P	.	.	.	.	A	Q	G	V	D	E	K	T	L	A	D	A	A	Q	L	A	S	L	A	D	E	T	P	E	G	R	S	I	V	I	L	A	K	Q	R	F	N	L	R	E	R	D	V	Q	S	L	H	A	T	F	V	P	F	T	A	Q	S	R	M	S	G	I	N	I	.	.	.	.	.	D
Query Conservation								.	.	.	.																																																																	.	.	.	.	.
Alig confidence								.	.	.	.																																									.	.	.																						.	.	.	.	.
Template Conservation																																																				.	.	.
Template Sequence		V	D	K	N	L	V	E	V	F	C	K	G	V	E	K	D	Q	V	L	L	F	A	A	M	A	S	R	V	E	N	Q	D	A	I	D	A	A	M	V	G	M	L	A	D	P	K	E	A	R	A	.	.	.	G	I	R	E	V	H	F	L	P	F	N	P	V	D	K	R	T	A	L	T	Y	I	D	G	S	G	N
Template Known Secondary structure				S					S	S		S	S	T	T														S	S	S			S								T	T			T	T					.	.	.	S	S			B							T	T	T						B	B		S	S	S	S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.														.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	R	M	I	R	K	G	S	V	D	A	I	R	R	H	V	E	A	N	G	G	H	F	P	T	D	V	D	Q	K	V	D	Q	V	A	R	Q	G	A	T	P	L	V	V	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	R	V	L	G	V	I	A	L	K	D	I	V	K	G	G	I	K	E	R
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		W	H	R	V	S	K	G	A	P	E	Q	I	L	E	L	A	K	A	S	.	N	D	L	S	K	K	V	L	S	I	I	D	K	Y	A	E	R	G	L	R	S	L	A	V	A	R	Q	V	V	P	E	K	T	K	E	S	P	G	A	P	W	E	F	V	G	L	L	P	L	F	D	P	P	R	H	D	S	A	E	T
Template Known Secondary structure		B		B					S	G	G	G	T	S	S	S	S				.	S	T	T	T	T	T									T	T	T	T									B				S	S	S	S	S
Template Predicted Secondary structure																					.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.																															490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	Q	L	R	K	M	G	I	K	T	V	M	I	T	G	D	N	R	L	T	A	A	A	I	A	A	E	A	G	V	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	A	E	A	T	P	E	A	K	L	A	L	I	R	Q	Y
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	R	A	L	N	L	G	V	N	V	K	M	I	T	G	D	Q	L	A	I	G	K	E	T	G	R	R	L	G	M	G	T	N	M	Y	P	S	S	A	L	L	G	T	H	K	D	A	N	L	A	S	I	P	V	E	E	L	I	E	K	A	D	G	F	A	G	V	F	P	E	H	K	Y	E	I	V	K	K	L
Template Known Secondary structure								T	T								S	S						T					T	T	T		T	T			S	S	S	S	S			B	G	G	G	G	T	T	S			S								T	S
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	E	G	R	L	V	A	M	T	G	D	G	T	N	D	A	P	A	L	A	Q	A	D	V	A	V	A	M	N	S	G	T	Q	A	A	K	E	A	G	N	M	V	D	L	D	S	N	P	T	K	L	I	E	V	V	H	I	G	K	Q	M	L	M	T	R	G	S	L	T	T	F	S	I	A	N	D	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	R	K	H	I	V	G	M	T	G	D	G	V	N	D	A	P	A	L	K	K	A	D	I	G	I	A	V	A	D	A	T	D	A	A	R	G	A	S	D	I	V	L	T	E	P	G	L	S	V	I	I	S	A	V	L	T	S	R	A	I	F	Q	R	M	K	N	Y	T	I	Y	A	V	S	I	T	I	R	I
Template Known Secondary structure				T	T					B				S	S	T	T							S	S	S					S	S	S					G	G	G		S	S		B	S	S		S					T					T																			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	A	I	I	P	A	A	F	A	A	T	Y	P	Q	L	N	A	L	N	I	M	C	L	H	S	P	D	S	A	I	L	S	A	V	I	F	N	A	L	I	I	V	F	L	I	P	L	A	L	K	G	V	S	Y
Query Conservation
Alig confidence													.																		.
Template Conservation													.																		.
Template Sequence		V	F	G	F	M	L	I	A	L	I	W	.	E	F	D	F	S	A	F	M	V	L	I	I	A	I	L	N	D	.	G	T	I	M	T	I	S	K	D	R	V	K	P	S	P	T	P	D	S	W	K	L	K	E	I
Template Known Secondary structure		T	S	T	T					S	S		.	S	S		S														.	T	T	T											S	S				S	T	T	T	T	T	T
Template Predicted Secondary structure													.																		.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.		.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.		.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.