Job Description P03960 Confidence 100.00% Date Thu Jan 5 10:58:08 GMT 2012 Rank 1 Aligned Residues 670 % Identity 22% Template c2zxeA_ PDB info PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	Q	L	A	L	F	E	P	T	L	V	V	Q	A	L	K	E	A	V	K	K	L	N	P	Q	A	Q	W	R	N	P	V	M	F	I	V	W	I	G	S	L	L	T	T	C	I	S	I	A	M	A	S	G	A	M	P	G	N	A	L	F	S	A	A	I	S	G	W	L	W	I	T	V	L	F	A	N	F	A
Query Conservation
Alig confidence																										.																													.
Template Conservation																										.																													.
Template Sequence		K	E	I	L	A	R	D	G	P	N	S	L	T	P	P	P	T	T	P	E	W	I	K	F	.	C	R	Q	L	F	G	G	F	S	I	L	L	W	I	G	A	I	L	C	F	L	A	Y	G	I	Q	A	A	.	T	E	D	E	P	A	N	D	N	L	Y	L	G	V	V	L	S	T	V	V	I	V	T	G	C	F
Template Known Secondary structure											S															.		T	T	T	T	S	T																						.	S	S
Template Predicted Secondary structure																										.																													.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		E	A	L	A	E	G	R	S	K	A	Q	A	N	S	L	K	G	V	K	K	T	A	F	A	R	K	L	R	E	P	K	Y	G	A	A	A	D	K	V	P	A	D	Q	L	R	K	G	D	I	V	L	V	E	A	G	D	I	I	P	C	D	G	E	V	I	E	G	G	.	A	S	V	D	E	S	A	I	T	G	E
Query Conservation																																																																						.
Alig confidence																							.								.	.	.	.																																				.
Template Conservation																							.								.	.	.	.
Template Sequence		S	Y	Y	Q	E	A	K	S	S	R	I	M	D	S	F	K	N	M	V	P	Q	.	Q	A	L	V	I	R	D	.	.	.	.	G	E	K	S	T	I	N	A	E	F	V	V	A	G	D	L	V	E	V	K	G	G	D	R	I	P	A	D	L	R	I	I	S	A	H	G	C	K	V	D	N	S	S	L	T	G	E
Template Known Secondary structure						T												T	T	S		S	.							T	.	.	.	.	T							G	G	G			T	T							T	T		B			S																			S
Template Predicted Secondary structure																							.								.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		162	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.
Query Sequence		S	A	P	V	I	R	E	S	G	G	D	.	.	.	.	.	.	.	F	A	S	V	T	G	G	T	R	I	L	S	D	W	L	V	I	E	C	S	V	N	P	G	E	T	F	L	D	R	M	I	A	M	V	E	G	A	Q	R	R	K	T	P	N	E	I	A	L	T	I	L	L	I	A	L	T	I	V	F	L	L
Query Conservation													.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	P	Q	T	R	S	P	E	F	S	S	E	N	P	L	E	T	R	N	I	A	F	F	S	T	N	C	V	E	G	T	A	R	G	V	V	V	Y	T	G	D	R	T	V	M	G	R	I	A	T	L	A	S	G	L	E	V	G	R	T	P	I	A	I	E	I	E	H	F	I	H	I	I	T	G	V	A	V	F
Template Known Secondary structure			S						S	S				S	S	T	T	T		S	S				T	T																G	G	G	S												S
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		235	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		A	T	A	T	L	W	P	F	S	A	W	G	G	.	.	N	A	V	S	V	T	V	L	V	A	L	L	V	C	L	I	P	T	T	I	G	G	L	L	S	A	I	G	V	A	G	M	S	R	M	L	G	A	N	V	I	A	T	S	G	R	A	V	E	A	A	G	D	V	D	V	L	L	L	D	K	T	G	T	I
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		L	G	V	S	F	F	I	L	S	L	I	L	G	Y	S	W	L	E	A	V	I	F	L	I	G	I	I	V	A	N	V	P	E	G	L	L	A	T	V	T	V	C	L	T	L	T	A	K	R	M	A	R	K	N	C	L	V	K	N	L	E	A	V	E	T	L	G	S	T	S	T	I	C	S	D	K	T	G	T	L
Template Known Secondary structure													T	T																		S		T	T																		T	T	T				S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		T	L	G	N	R	Q	A	S	E	F	I	P	A	Q	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	K	T	L	A	D	A	A	Q	L	A	S	L	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	P	E	G	R	S	I	V	I	L	A	.
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		T	Q	N	R	M	T	V	A	H	M	W	F	D	N	Q	I	H	E	A	D	T	T	E	N	Q	S	G	A	A	F	D	K	T	S	A	T	W	S	A	L	S	R	I	A	A	L	C	N	R	A	V	F	Q	A	G	Q	D	N	V	P	I	L	K	R	S	V	A	G	D	A	S	E	S	A	L	L	K	C	I	E
Template Known Secondary structure		B		S	S									T	T									T	T			S					S	S														S							T	T		T	T	S		G	G	G	S				S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390									.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.										.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	R	F	N	L	R	E	R	D	V	Q	S	L	H	A	T	F	V	P	F	T	A	Q	S	R	M	S	G	I	N	I	D	N	.	.	.	.	.	.	.	.	R	M	I	R	K	G	S	V	D	A	I	R	R	H	V	E	A	.	.	.	.	.	.	.	.	.	N	G	G	H	F	P	T	D	V	D	Q	K
Query Conservation																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	C	C	G	S	V	Q	G	M	R	D	R	N	P	K	I	V	E	I	P	F	N	S	T	N	K	Y	Q	L	S	I	H	E	N	E	K	S	S	E	S	R	Y	L	L	V	M	K	G	A	P	E	R	I	L	D	R	C	S	T	I	L	L	N	G	A	E	E	P	L	K	E	D	M	K	E	A	F	Q	N	A
Template Known Secondary structure					S									S										T	T	T										S		T	T	T																T	T						B	T	T	B			B
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.																									.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	Q	V	A	R	Q	G	A	T	P	L	V	V	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	R	V	L	G	V	I	A	L	K	D	I	V	K	G	G	I	K	E	R	F	A	Q	L	R	K	M	G	I	K	T	V	M	I	T	G	D	N	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	E	L	G	G	L	G	E	R	V	L	G	F	C	H	F	A	L	P	E	D	K	Y	N	E	G	Y	P	F	D	A	D	E	P	N	F	P	T	T	D	L	C	F	V	G	L	M	A	M	I	D	P	P	R	A	A	V	P	D	A	V	G	K	C	R	S	A	G	I	K	V	I	M	V	T	G	D	H	P
Template Known Secondary structure								T	T													S	T	T	S		T	T					T	T	T	T		S			S	S													B		T	T											T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.																																																						490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	A	A	A	I	A	A	E	A	G	V	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	A	E	A	T	P	E	A	K	L	A	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	A	K	A	I	A	K	G	V	G	I	I	S	E	G	N	E	T	I	E	D	I	A	A	R	L	N	I	P	I	G	Q	V	N	P	R	D	A	K	A	C	V	V	H	G	S	D	L	K	D	L	S	T	E	V	L	D	D	I	L	H	Y	H	T	E	I	V	F	A	R	T	S	P	Q	Q	K	L	I	I
Template Known Secondary structure												T	S	S		T	T											T	T			G	G	G	S		G	G	G												T	T														S						S
Template Predicted Secondary structure
Template SS confidence
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		I	R	Q	Y	Q	A	E	G	R	L	V	A	M	T	G	D	G	T	N	D	A	P	A	L	A	Q	A	D	V	A	V	A	M	N	.	S	G	T	Q	A	A	K	E	A	G	N	M	V	D	L	D	S	N	P	T	K	L	I	E	V	V	H	I	G	K	Q	M	L	M	T	R	G	S	L	T	T	F	S	I	A
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		V	E	G	C	Q	R	Q	G	A	I	V	A	V	T	G	D	G	V	N	D	S	P	A	L	K	K	A	D	I	G	V	A	M	G	I	S	G	S	D	V	S	K	Q	A	A	D	M	I	L	L	D	D	N	F	A	S	I	V	T	G	V	E	E	G	R	L	I	F	D	N	L	K	K	S	I	A	Y	T	L	T
Template Known Secondary structure								T	T									S	G	G	G							S	S						S	S	S										S				T	T			T
Template Predicted Secondary structure
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	V	A	K	Y	F	A	I	I	P	A	A	F	A	A	T	Y	P	Q	L	N	A	L	N	I	M	C	L	H	S	P	D	S	A	I	L	S	A	V	I	F	N	A	L	I	I	V	F	L	I	P	L	A	L	K	G	V	S	Y	K	P	L	T	A	S	A	M	L	R	R	N	L	W	I	Y	G	L	G	G
Query Conservation
Alig confidence																																																																							.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		S	N	I	P	E	I	T	P	F	L	V	F	I	I	G	N	V	P	L	P	L	G	T	V	T	I	L	C	I	D	L	G	T	D	M	V	P	A	I	S	L	A	Y	E	Q	A	E	S	D	I	M	K	R	Q	P	R	N	P	K	T	D	K	L	V	N	E	R	L	I	.	.	.	S	M	A	Y	G	Q	I	G
Template Known Secondary structure		T	T																		S	S										T	T	T	T							G	G	G				S	S		G	G	G	S					T	T	T			S	S						.	.	.				T	T	T
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850				.	.	.	.	.	.	.	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	P	F	I	G	I	K	V	I	D	L	L	L	T	V	C	G	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	Q	A	L	G	G	F	F	S	Y	F	V	I	L	A	E	N	G	F	L
Template Known Secondary structure																			T	T
Template Predicted Secondary structure
Template SS confidence
		859	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.