 |
Job Description | P03960 | Confidence | 99.55% | Date | Thu Jan 5 10:58:08 GMT 2012 |
Rank | 26 | Aligned Residues | 118 |
% Identity | 15% | Template | c2r8zC_ |
PDB info |
PDB header:hydrolase | Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; |
PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion
|
Resolution | 2.10 Å |
|
 |
  |   |
455 | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | |
|
|
|
. | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | R | F | A | Q | L | R | K | M | G | I | K | T | V | M | I | T | G | D | N | R | L | T | A | A | A | I | A | A | E | A | G | V | D | D | F | L | A | E | A | T | P | E | A | K | L | A | L | I | R | Q | Y | Q | A | E | G | R | L | . |
. |
. |
. |
V | A | M | T | G | D | G | T | N | D | A | P | A | L | A | Q | A | D |
Query Conservation |   |
  |   |
|   |   |
|   |   |
|
|
|   |
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|
|   |   |
|
|   |
|   |   |
|
|   |   |
|
|   |   |
|   |   | . | . | . | . |
|   |
|
|
|
|
|   |
|
|
|
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   | . | . |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|   |   |   |
|
|   |   |
|
|
|   |   |
|
|   |   |
|
|   |   |
|
|
Template Sequence |   |
Y | G | I | R | C | A | L | T | S | D | I | E | V | A | I | I | T | G | R | K | A | K | L | V | E | D | R | C | A | T | L | G | I | T | H | L | Y | . |
. |
Q | G | Q | S | N | K | L | I | A | F | S | D | L | L | E | K | L | A | I | A | P | E | N | V | A | Y | V | G | D | D | L | I | D | W | P | V | M | E | K | V | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  | . | . |
| S |
| S | S |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |  |  |  | S | S | G | G | G |  |  |  |  | T | T | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | |
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
  |   |
531 | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | |
|
|
|
. | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | A | V | A | M | N | S | G | T | Q | A | A | K | E | A | G | N | M | V | D | L | D | S | N | . |
. |
. |
. |
P | T | K | L | I | E | V | V | H | I | G | K | Q | M | L | M | T | R | G | S |
Query Conservation |   |
|
|
|
|
|   |   |
|
|   |   |
|   |   |
|
|
|
|
|
|   |   |   |   | . | . | . | . |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|   |
|
|   |   |   |   |
|   |   |
|
|   |
|   |   |   |   |   |
|   |
|   |   |
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | S | V | A | V | A | D | A | H | P | L | L | I | P | R | A | D | Y | V | T | R | I | A | G | G | R | G | A | V | R | E | V | C | D | L | L | L | L | A | Q | G | K | L | D | E | A | K | G |
Template Known Secondary structure |   |
 |  |  |  |
| T | T | S |
| T | T | T | G | G | G | S | S |  |  |
| S | S |
| T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | T |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|