Job Description P03960 Confidence 100.00% Date Thu Jan 5 10:58:08 GMT 2012 Rank 3 Aligned Residues 641 % Identity 21% Template c1mhsA_ PDB info PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase Resolution 8.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	Q	L	A	L	F	E	P	T	L	V	V	Q	A	L	K	E	A	V	K	K	L	N	P	Q	A	Q	W	R	N	P	V	M	F	I	V	W	I	G	S	L	L	T	T	C	I	S	I	A	M	A	S	G	A	M	P	G	N	A	L	F	S	A	A	I	S	G	W	L	W	I	T	V	L	F	A	N	F	A
Query Conservation
Alig confidence																										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	R	R	R	K	Y	G	L	N	Q	M	K	E	E	K	E	N	H	F	L	K	F	L	.	.	G	F	F	V	G	P	I	Q	F	V	M	E	G	A	A	V	L	A	A	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	V	D	F	G	V	I	C	G	L	L	L	L	N	A	V	V
Template Known Secondary structure								T	S	S	S	S							S	S					T	.	.																			T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		E	A	L	A	E	G	R	S	K	A	Q	A	N	S	L	K	G	V	K	K	T	A	F	A	R	K	L	R	E	P	K	Y	G	A	A	A	D	K	V	P	A	D	Q	L	R	K	G	D	I	V	L	V	E	A	G	D	I	I	P	C	D	G	E	V	I	E	G	G	.	.	A	S	V	D	E	S	A	I	T	G
Query Conservation																																																																						.	.
Alig confidence																					.										.	.	.	.																																				.	.
Template Conservation																					.										.	.	.	.
Template Sequence		G	F	V	Q	E	F	Q	A	G	S	I	V	D	E	L	K	K	T	L	.	A	L	K	A	V	V	L	R	D	.	.	.	.	G	T	L	K	E	I	E	A	P	E	V	V	P	G	D	I	L	Q	V	E	E	G	T	I	I	P	A	D	G	R	I	V	T	D	D	A	F	L	Q	V	D	Q	S	A	L	T	G
Template Known Secondary structure															T	T	T	T			.		S	S						S	.	.	.	.	S	S						T	T	T	S		T	T	S						T	T		B		S	S								S	S					B		T	T	T	S	S
Template Predicted Secondary structure																					.										.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	A	P	V	I	R	E	S	G	G	D	F	A	S	V	T	G	G	T	R	I	L	S	D	W	L	V	I	E	C	S	V	N	P	G	E	T	F	L	D	R	M	I	A	M	V	E	G	A	Q	R	R	K	T	P	N	E	I	A	L	T	I	L	L	I	A	L	T	I	V	F	L	L	A	T	A	T	L	W
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		E	S	L	A	V	D	K	H	K	G	D	.	.	.	Q	V	F	A	S	S	A	V	K	R	G	E	A	F	V	V	I	T	A	T	G	D	N	T	F	V	G	R	A	A	A	L	V	N	A	A	S	G	G	S	G	H	F	T	E	V	L	N	G	I	G	T	I	L	L	I	L	V	I	F	T	L	L	I	V	W
Template Known Secondary structure										S	S		.	.	.				S		B			S												S	T	T		S	T	T	T	T	T	S	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		P	F	S	A	W	G	G	.	.	N	A	V	S	V	T	V	L	V	A	L	L	V	C	L	I	P	T	T	I	G	G	L	L	S	A	I	G	V	A	G	M	S	R	M	L	G	A	N	V	I	A	T	S	G	R	A	V	E	A	A	G	D	V	D	V	L	L	L	D	K	T	G	T	I	T	L	G	N	R	Q
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		V	S	S	F	Y	R	S	N	P	I	V	Q	I	L	E	F	T	L	A	I	T	I	I	G	V	P	V	G	L	P	A	V	V	T	T	T	M	A	V	G	A	A	Y	L	A	K	K	K	A	I	V	Q	K	L	S	A	I	E	S	L	A	G	V	E	I	L	C	S	D	K	T	G	T	L	T	K	N	K	L	S
Template Known Secondary structure			T	T	T	T	T	T																		S																						T	T						T	T	T						T								T	B	T	T	T	B	S	S		S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																														.	.	.																																													.	.	.	.	.
Query SS confidence																														.	.	.																																													.	.	.	.	.
Query Sequence		A	S	E	F	I	P	A	Q	G	V	D	E	K	T	L	A	D	A	A	Q	L	A	S	L	A	D	E	T	.	.	.	P	E	G	R	S	I	V	I	L	A	K	Q	R	F	N	L	R	E	R	D	V	Q	S	L	H	A	T	F	V	P	F	T	A	Q	S	R	M	S	G	I	N	I	D	N	.	.	.	.	.
Query Conservation																														.	.	.																																													.	.	.	.	.
Alig confidence																														.	.	.																																													.	.	.	.	.
Template Conservation
Template Sequence		L	H	D	P	Y	T	V	A	G	V	D	P	E	D	L	M	L	T	A	C	L	A	A	S	R	K	K	K	G	I	D	A	I	D	K	A	F	L	K	S	L	K	Y	Y	P	R	A	K	S	V	L	S	K	Y	K	V	L	Q	F	H	P	F	D	P	V	S	K	K	V	V	A	V	V	E	S	P	Q	G	E	R
Template Known Secondary structure						B			S					T									S				S	S		S			S												S	S	S			G	G	G	S												T	T	T	T									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.						.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																			.	.	.																													.	.	.	.	.
Query SS confidence																			.	.	.																													.	.	.	.	.
Query Sequence		R	M	I	R	K	G	S	V	D	A	I	R	R	H	V	E	A	.	.	.	N	G	G	H	F	P	T	D	V	D	Q	K	V	D	Q	V	A	R	Q	G	A	T	P	L	V	V	V	E	.	.	.	.	.	G	S	R	V	L	G	V	I	A	L	K	D	I	V	K	G	G	I	K	E	R	F	A	Q	L	R	K
Query Conservation																			.	.	.																													.	.	.	.	.
Alig confidence																			.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		I	T	C	V	K	G	A	P	L	F	V	L	K	T	V	E	E	D	H	P	I	P	E	E	V	D	Q	A	Y	K	N	K	V	A	E	F	A	T	R	G	F	R	S	L	G	V	A	R	K	R	G	E	G	S	W	E	I	L	G	I	M	P	C	M	D	P	P	R	H	D	T	Y	K	T	V	C	E	A	K	T
Template Known Secondary structure																			S	S																			T	S	S										S	S	S		S					B	B
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.																														490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	I	K	T	V	M	I	T	G	D	N	R	L	T	A	A	A	I	A	A	E	A	G	V	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	A	E	A	T	P	E	A	K	L	A	L	I	R	Q	Y	Q	A	E	G	R	L	V
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	L	S	I	K	M	L	T	G	D	A	V	G	I	A	R	E	T	S	R	Q	L	G	L	G	T	N	I	Y	N	A	E	R	L	G	L	G	G	G	G	D	M	P	G	S	E	V	Y	D	F	V	E	A	A	D	G	F	A	E	V	F	P	Q	H	K	Y	N	V	V	E	I	L	Q	Q	R	G	Y	L	V
Template Known Secondary structure			T								S	S													T	S	S		S				S	S	S	S	S	S		B				G	G	G	G	G	G	G	T	T	T	T	T	T	S				S			S	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	T	G	D	G	T	N	D	A	P	A	L	A	Q	A	D	V	A	V	A	M	N	S	G	T	Q	A	A	K	E	A	G	N	M	V	D	L	D	S	N	P	T	K	L	I	E	V	V	H	I	G	K	Q	M	L	M	T	R	G	S	L	T	T	F	S	I	A	N	D	V	A	K	Y	F	A	I	I	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	T	G	D	G	V	N	D	A	P	S	L	K	K	A	D	T	G	I	A	V	E	G	S	S	D	A	A	R	S	A	A	D	I	V	F	L	A	P	G	L	G	A	I	I	D	A	L	K	T	S	R	Q	I	F	H	R	M	Y	A	Y	V	V	Y	R	I	A	L	S	I	H	L	E	I	F	L	G	L	W
Template Known Secondary structure								G	G	G							S	S						T	T	S							S	S	S				S	S			S
Template Predicted Secondary structure
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	A	A	T	Y	P	Q	L	N	A	L	N	I	M	C	L	H	S	P	D	S	A	I	L	S	A	V	I	F	N	A	L	I	I	V	F	L	I	P	L	A	L	K	G	V	S	Y	K	P	L	T	A	S	A	M	L	R	R	N	L	W	I	Y	G	L	G	G	L	L	V	P	F	I	G	I	K	V	I	D
Query Conservation
Alig confidence								.																.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	I	L	N	R	.	S	L	N	I	E	L	V	V	F	I	A	I	F	A	D	.	V	A	T	L	A	I	A	Y	D	N	A	P	Y	S	Q	T	P	V	K	W	N	L	P	K	L	.	.	.	.	.	.	.	.	.	.	.	.	W	G	M	S	V	L	L	G	V	V	L	A	V	G	T	W	I	T	V	T
Template Known Secondary structure				S		S		.															T	.	T										S	G	G	G	G	S						S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure								.																.																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		710	.	.	.	.	.		.	.	.	.	720	.	.	.	.	.	.	.	.	.	730		.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.													.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
		674	.	.	.	.	.	680	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	T	V	C	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	M	Y	A	Q	G	E	N
Template Known Secondary structure				T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		776	.	.	.	780	.	.	.