Job Description P02358 Confidence 100.00% Date Thu Jan 5 10:57:29 GMT 2012 Rank 2 Aligned Residues 100 % Identity 100% Template c2qbbF_ PDB info PDB header:ribosome Chain: F: PDB Molecule:30s ribosomal protein s6; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 30s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. Resolution 3.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	H	Y	E	I	V	F	M	V	H	P	D	Q	S	E	Q	V	P	G	M	I	E	R	Y	T	A	A	I	T	G	A	E	G	K	I	H	R	L	E	D	W	G	R	R	Q	L	A	Y	P	I	N	K	L	H	K	A	H	Y	V	L	M	N	V	E	A	P	Q	E	V	I	D	E	L	E	T	T	F	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	H	Y	E	I	V	F	M	V	H	P	D	Q	S	E	Q	V	P	G	M	I	E	R	Y	T	A	A	I	T	G	A	E	G	K	I	H	R	L	E	D	W	G	R	R	Q	L	A	Y	P	I	N	K	L	H	K	A	H	Y	V	L	M	N	V	E	A	P	Q	E	V	I	D	E	L	E	T	T	F	R	F
Template Known Secondary structure													G	G	G	T	T																T	T										B	S				S	S		T	T	S		S			B	B																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	A	V	I	R	S	M	V	M	R	T	K	H	A	V	T	E	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	A	V	I	R	S	M	V	M	R	T	K	H	A	V	T	E	A	S
Template Known Secondary structure			T	T										S	S				S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions