 |
Job Description | P19767 | Confidence | 70.65% | Date | Thu Jan 5 11:37:29 GMT 2012 |
Rank | 478 | Aligned Residues | 36 |
% Identity | 25% | Template | c1un6D_ |
PDB info |
PDB header:rna-binding protein/rna | Chain: D: PDB Molecule:transcription factor iiia; |
PDBTitle: the crystal structure of a zinc finger - rna complex2 reveals two modes of molecular recognition
|
Resolution | 3.10 Å |
|
  |   |
4 | . | . | . | . | . | 10 | |
|
. | . | |
|
|
|
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
| . | . |
|
| . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | S | I | R | C | P | S | . |
. |
C | S | . |
. |
. |
. |
A | T | E | G | V | V | R | N | G | K | S | T | A | G | H | Q | R | Y | L | C | S | P | C | R | K | T | W |
Query Conservation |   |
  |   |   |   |
|
|   | . | . |
|
| . | . | . | . |   |   |   |   |
|   |
|   |
|   |   |   |   |
|
|
|
|
|   |
|
|   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
| . | . |
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |   |   |   |
|   |
|   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |   |   |
|   |   |
|   |
|   |
|
Template Sequence |   |
L | P | Y | E | C | P | H | E | G | C | D | K | R | F | S | L | P | S | R | L | K | R | H | E | K | V | H | A | G | Y | P | C | K | K | D | D | S | C | S | F | V | G |
Template Known Secondary structure |   |
|
|
| B |
|
| S | T | T |
|
|
| B |
| S |
|  |  |  |  |  |  |  | T | T | S | S |
|
|  |  |
|
| S | S | T | T |
|
|
|  |  |
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|