Job Description Q47536 Confidence 99.95% Date Thu Jan 5 12:36:49 GMT 2012 Rank 3 Aligned Residues 246 % Identity 13% Template d1xhba2 SCOP info Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain Resolution 2.50

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																										.																	.		.	.																								.	.
Query SS confidence																										.																	.		.	.																								.	.
Query Sequence		S	T	L	R	R	K	P	S	Q	K	K	G	C	I	D	A	I	I	P	A	Y	N	E	G	.	P	C	L	A	Q	S	L	D	N	L	L	R	N	P	Y	F	.	C	.	.	R	V	I	C	V	N	D	G	S	T	D	N	T	E	A	V	M	A	E	V	K	R	K	.	.	W	G	D	R	F	V	A	V	T	Q
Query Conservation																										.																	.		.	.																								.	.
Alig confidence																										.																	.		.	.																								.	.
Template Conservation
Template Sequence		G	C	K	T	K	V	Y	P	D	N	L	P	T	T	S	V	V	I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	L	K	V	P	V	H	V	I	R	M	E
Template Known Secondary structure		G	G	G	T					S												S	S																S	S		G	G	G										S				G	G	G	T									S	S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		K	N	T	G	K	G	G	A	L	M	N	G	L	N	Y	A	T	C	D	Q	V	F	L	S	D	A	D	T	Y	V	P	P	D	Q	D	G	M	G	Y	M	L	A	E	I	E	R	G	A	D	A	V	G	G	I	P	S	T	A	L	K	G	A	G	L	L	P	H	I	R	A	T	V	K	L	P	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																			.	.																																									.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		Q	R	S	G	L	I	R	A	R	L	K	G	A	A	V	S	R	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	.	.	W	L	E	P	L	L	A	R	I	K	H	D	R	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M	A	G	S	D	M	T	Y	G	G	F	N	W	K
Template Known Secondary structure		S																	S	S							S	S					T	T	.	.													T	T												S	S	S								T	T							T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
												168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																		.										.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																		.										.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	M	I	V	M	K	R	T	L	Q	Q	L	L	G	G	A	P	F	I	I	S	G	A	C	G	M	F	R	T	D	V	L	R	K	.	F	G	F	S	D	R	T	K	V	.	.	.	E	D	L	D	L	T	W	T	L	V	A	N	G	Y	R	I	R	Q	A	N	R	C	I	V
Query Conservation		.	.	.	.	.	.	.	.	.	.																																		.										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																		.										.	.	.
Template Conservation
Template Sequence		L	N	F	R	W	Y	P	V	P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	I	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I	S	F	R	I	W	Q	C	G	G	T	L	E	I	V	T	C	S	H	V
Template Known Secondary structure																	T	T	T		T	T	S					S	B			S	S	S											T	T	S			T	T	S		T	T					S									T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		234	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		Y	P	.	Q	E	C	N	S	P	R	E	E	W	R	R	W	R	R	W	I	V	G	Y	A	V	C	M	R	L	H	K	R	L	L
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		G	H	V	F	G	Q	I	I	N	K	N	N	R	R	L	A	E	V	W	M	D	E	F	K	N	F	F	Y	I	I	S	P	G	V
Template Known Secondary structure																						G	G	G	G						T	S	T	T	G
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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