Job Description Q47536 Confidence 44.83% Date Thu Jan 5 12:36:49 GMT 2012 Rank 55 Aligned Residues 114 % Identity 13% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		31	.	.	.	.	.	.	.	.	40															.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	I	D	A	I	I	P	A	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	P	C	L	A	Q	S	L	D	N	L	L	R	N	P	Y	F	C	R	V	I	C	V	N	D	G	S	T	D	N	T	E	A	V	M	A	E	V	K	R	K	W	G	D	R	F	V	A	V	T	Q	K	N	T	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.											.	.	.	.	.	.
Template Conservation																																										.											.	.	.	.	.	.
Template Sequence		S	F	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	.	A	D	R	V	I	I	A	T	D	D	.	.	.	.	.	.	E	R	V	E	Q	A	V	Q	A	F	G	G	V	V	C	M	T	S	P	N	H	Q	S
Template Known Secondary structure											S			S	S	S	T	T	G	G	G				T	T														T	T	.		S							S		.	.	.	.	.	.										T	T								S	S	S
Template Predicted Secondary structure																																										.											.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		K	G	G	A	L	M	N	G	L	N	Y	A	T	C	D	Q	.	.	.	V	F	L	S	D	A	D	T	Y	V	P	P	D	Q	D	G	M	G	Y	M	L	A	E	I	E	R	G	A	D	A	V	G	G	I	P	S	T	A	L
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		G	T	E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S	A	P	M	A	T	L	A	V	E	I	E	D
Template Known Secondary structure		S											T	T			T	T								T	T		T	T															T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions