Job Description Q47536 Confidence 57.26% Date Thu Jan 5 12:36:49 GMT 2012 Rank 49 Aligned Residues 197 % Identity 13% Template c2y6pC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb Resolution 2.10 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	G	P	C	L	A	Q	S	L	D	N	L	L	R	N	P	Y	F	C	R	V	I	C	V	N	D	G	S	T	D	N	T	E	A	V	M	A	E	V	K	R	K	W	G	D	R	F	V	A	V	T	Q	K	N	T	G	K	G	G	A	L	M	N	G	L	N	Y	A	T	C	D	Q	V	F	L	S	D	A	D
Query Conservation
Alig confidence																		.	.											.	.														.	.	.	.	.
Template Conservation																		.	.											.	.														.	.	.	.	.
Template Sequence		L	G	K	P	L	I	R	W	V	V	E	G	L	V	K	T	.	.	G	E	R	V	I	L	A	T	D	S	.	.	E	R	V	K	E	V	V	E	D	L	C	E	V	.	.	.	.	.	F	L	T	P	S	D	L	P	S	G	S	D	R	V	L	Y	V	V	R	D	L	D	V	D	L	I	I	N	Y	Q	G	D
Template Known Secondary structure		T	T													T	T	.	.	T	S							S		.	.								T	T	T	S			.	.	.	.	.					T	T		S	S										T	T				S							T	T
Template Predicted Secondary structure																		.	.											.	.														.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		T	Y	V	P	P	D	Q	D	G	M	G	Y	M	L	A	E	I	E	R	G	A	D	A	V	G	G	I	P	S	T	A	L	K	G	A	G	L	L	P	H	I	R	A	T	V	K	L	P	M	I	V	M	K	R	T	.	.	.	L	Q	Q	L	L	G	G	A	P	F	I	I	S	G	A	C	G	M	F	R	T	D
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.
Template Conservation
Template Sequence		E	P	F	V	Y	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	V	T	L	A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G	Y	A	L	Y	F	S	R	S	P	I	P	Y	F	R	K	N	D	T	F	Y	P	L	K	H	V	G	I	Y	G	F	R	K	E
Template Known Secondary structure																				T		S									S	T	T	T	T		T	T	S							T	T	S	B						S	S			S			S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		V	L	R	K	F	G	F	S	D	R	T	K	V	E	D	L	D	L	.	.	T	W	T	L	V	A	N	G	Y	R	I	R	Q	A	N	R	C	I	V	Y	P	Q	E	C	N	S	P	R	E	E	W	R
Query Conservation																				.	.
Alig confidence																				.	.																						.
Template Conservation																																											.
Template Sequence		T	L	M	E	F	G	A	M	P	P	S	K	L	E	Q	I	E	G	L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E	N	Y	Y	H	.	G	V	D	T	E	E	D	L	K	I
Template Known Secondary structure								T	S										T		T							T	T										S				.				S
Template Predicted Secondary structure																																											.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions