Job Description Q47536 Confidence 99.95% Date Thu Jan 5 12:36:49 GMT 2012 Rank 4 Aligned Residues 217 % Identity 13% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																										.																		.	.	.
Query SS confidence																										.																		.	.	.
Query Sequence		S	T	L	R	R	K	P	S	Q	K	K	G	C	I	D	A	I	I	P	A	Y	N	E	G	.	P	C	L	A	Q	S	L	D	N	L	L	R	N	P	Y	F	C	.	.	.	R	V	I	C	V	N	D	G	S	T	D	N	T	E	A	V	M	A	E	V	K	R	K	W	G	D	R	F	V	A	V	T	Q	K	N
Query Conservation																										.																		.	.	.
Alig confidence																										.																		.	.	.																					.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		Q	C	Q	R	K	Q	W	R	V	D	L	P	A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L	L	G	K	.	.	.	I	E	K	V	R	V	L	R	N	D	R	R
Template Known Secondary structure		G	G	G	G					S	S											S	S																	S		G	G	G										S		S		T					G	G	G	G	.	.	.	B	T	T							S	S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	K	G	G	A	L	M	N	G	L	N	Y	A	T	C	D	Q	V	F	L	S	D	A	D	T	Y	V	P	P	D	Q	D	G	M	G	Y	M	L	A	E	I	E	R	G	A	D	A	V	G	G	I	P	S	T	A	L	K	G	A	G	L	L	P	H	I	R	A	T	V	K	L	P	M	I	V	M	K	R	T
Query Conservation
Alig confidence																																	.	.
Template Conservation																																	.	.
Template Sequence		E	G	L	M	R	S	R	V	R	G	A	D	A	A	Q	A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	.	.	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A	S	A	D	L	K	G	G	F	D	W	N	L	V
Template Known Secondary structure																	S	S							S	S					T	T	.	.													T	T												T	T	T								S	S							T	T
Template Predicted Secondary structure																																	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.																	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		L	Q	Q	L	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	F	I	I	S	G	A	C	G	M	F	R	T	D	V	L	R	K	F	G	F	S	D	R	T	K	.	.	.	V	E	D	L	D	L	T	W	T	L	V	A	N	G	Y	R	I	R	Q	A	N	R	C	I	V	Y	P
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	Q	G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V	W	Q	C	G	G	S	L	E	I	I	P	C	S	R	V	G	H
Template Known Secondary structure															T	S	S		T	T	S					S	S			S	S	S											T	T				T	T			S	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		236	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	C	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	R	K	Q
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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