Job Description Q9S4W2 Confidence 99.20% Date Thu Jan 5 12:38:17 GMT 2012 Rank 9 Aligned Residues 100 % Identity 15% Template c3mkyP_ PDB info PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form Resolution 2.86 Å

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		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																				.	.																																					.
Query SS confidence																				.	.																																					.
Query Sequence		D	M	H	P	A	E	Q	I	A	G	F	R	A	M	A	Q	E	G	.	.	K	T	P	A	Q	I	G	D	L	L	G	Y	S	P	R	H	V	Q	R	M	L	K	L	A	D	L	A	P	V	I	L	D	A	L	A	E	.	D	R	I	T	T	E	H	C	Q	A	L	A	L	E	N	D	T	A	R	Q	V	Q	V
Query Conservation																				.	.																																					.
Alig confidence																				.	.																																					.																.
Template Conservation																																																																										.
Template Sequence		P	T	S	A	Y	E	R	G	Q	R	Y	A	S	R	L	Q	N	E	F	A	G	N	I	S	A	L	A	D	A	E	N	I	S	R	K	I	I	T	R	C	I	N	T	A	K	L	P	K	S	V	V	A	L	F	S	H	P	G	E	L	S	A	R	S	G	D	A	L	Q	K	A	F	.	T	D	K	E	E	L	L
Template Known Secondary structure																		T	T	T	T	T										T	S													T	S							T	S	S	S	G	G	G	S												T	.	T	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.
		213	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		F	E	A	A	C	Q	.	.	.	.	S	G	W	G	G	K	P	D	V	R	V	I	R	N	L	I	T	E
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence		K	Q	Q	A	S	N	L	H	E	Q	K	K	A	G	V	I	F	E	A	D	E	V	I	T	L	L	T	S
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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