Job Description P32153 Confidence 100.00% Date Thu Jan 5 11:49:33 GMT 2012 Rank 11 Aligned Residues 335 % Identity 14% Template c3tx8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a succinyl-diaminopimelate desuccinylase (arge)2 from corynebacterium glutamicum atcc 13032 at 2.97 a resolution Resolution 2.97 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.
Predicted Secondary structure				.	.																																						.	.															.																.	.
Query SS confidence				.	.																																						.	.															.																.	.
Query Sequence		M	N	.	.	I	E	L	L	Q	Q	L	C	E	A	S	A	V	S	G	D	E	Q	E	V	R	D	I	L	I	N	T	L	E	P	C	V	N	E	I	T	F	.	.	D	G	L	G	S	F	V	A	R	K	G	N	K	G	.	P	K	V	A	V	V	G	H	M	D	E	V	G	F	M	.	.	V	T	H	I	D
Query Conservation				.	.																																						.	.															.																.	.
Alig confidence				.	.																																						.	.															.																.	.
Template Conservation
Template Sequence		L	G	D	P	I	V	L	T	Q	R	L	V	D	I	P	S	P	S	G	Q	E	K	Q	I	A	D	E	I	E	D	A	L	R	N	L	N	L	P	G	V	E	V	F	R	F	N	N	N	V	L	A	R	T	N	R	G	L	A	S	R	V	X	L	A	G	H	I	D	T	V	P	I	A	D	N	L	P	S	R	V
Template Known Secondary structure			S											S	S			B	T	T		T													T	T	T		T	T							T	T											S											B	S				S			S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.
Query Sequence		E	S	G	F	L	R	F	T	T	I	G	G	W	W	N	Q	S	M	L	N	H	R	V	T	I	R	T	H	K	G	V	K	I	P	G	V	I	G	S	V	A	P	H	A	L	T	E	K	Q	K	Q	Q	P	L	S	F	D	.	.	.	.	.	.	E	M	F	I	D	I	G	A	N	S	R	E	E	V	E	K	R
Query Conservation																																																											.	.	.	.	.	.
Alig confidence											.	.																																															.	.	.	.	.	.
Template Conservation											.	.
Template Sequence		E	D	G	I	X	Y	G	C	G	.	.	T	V	D	X	K	S	G	L	A	V	Y	L	H	T	F	A	T	L	A	T	S	T	E	L	K	H	D	L	T	L	I	A	Y	E	C	E	E	V	A	D	H	L	N	G	L	G	H	I	R	D	E	H	P	E	W	L	A	A	D	L	A	L	L	G	E	P	T	G	G
Template Known Secondary structure			S	S				S	S	S	.	.	T	T	T	T															T	S		T	T			S											S	S		T	T	S											G	G	G	G			S									T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		G	V	E	I	G	N	F	I	S	P	E	A	N	F	A	C	W	G	E	D	K	V	V	G	K	A	L	D	N	R	I	G	C	A	M	M	A	E	L	L	Q	T	V	N	N	P	E	I	T	L	Y	G	V	G	S	.	.	.	V	E	E	E	V	G	L	R	G	A	Q	T	S	A	E	H	I	K	P	D	V	V
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.
Template Conservation
Template Sequence		W	I	E	A	G	C	Q	G	N	L	R	I	K	V	T	A	H	G	V	R	A	H	S	A	R	S	W	L	G	D	N	A	X	H	K	L	S	P	I	I	S	K	V	A	A	Y	K	A	A	E	V	N	I	D	G	L	T	Y	R	E	G	L	N	I	V	F	C	E	S	G	V	A	N	N	V	I	P	D	L	A
Template Known Secondary structure						S	B													B			B	T	T	S	G	G	G	S	B		T	G	G	G	G																		T	T																S	B	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		I	V	L	D	T	A	V	A	G	D	V	P	G	I	D	N	I	K	Y	P	L	K	.	.	.	.	.	.	L	G	Q	G	P	G	L	M	L	F	D	K	R	Y	F	P	N	Q	K	L	V	A	A	L	K	S	C	A	A	H	N	D	L	P	L	Q	F	S	T	M	K	T	G	A	T	D	G	G	R	Y	N	V
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																																									.
Template Conservation																																																																						.
Template Sequence		W	X	N	L	N	F	R	F	A	P	N	R	D	L	N	E	A	I	E	H	V	V	E	T	L	E	L	D	G	Q	D	G	I	E	W	A	V	E	D	G	A	G	G	A	L	P	G	L	G	Q	Q	V	T	S	G	L	I	D	A	V	G	R	E	K	I	R	A	K	.	F	G	W	T	D	V	S	R	F	S	A
Template Known Secondary structure											T	T	S													T	T	T	T	T	S	T	T												B				T	T	S												G	G	G					.		S			T						T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		M	G	G	G	R	P	V	V	A	L	C	L	.	P	T	R	Y	L	H	A	N	S	G	M	I	S	K	A	D	Y	E	A	L	L	T	L	I	R	G	F	L	T	T
Query Conservation														.
Alig confidence			.	.										.
Template Conservation			.	.
Template Sequence		X	.	.	G	I	P	A	L	N	F	G	A	G	D	P	S	F	A	H	K	R	D	E	Q	C	P	V	E	Q	I	T	D	V	A	A	I	L	K	Q	Y	L	S	E
Template Known Secondary structure		T	.	.	T								S	S		S	S	S	S	S		T	T
Template Predicted Secondary structure			.	.
Template SS confidence
		329			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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