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Job DescriptionP32153
Confidence99.96%DateThu Jan 5 11:49:33 GMT 2012
Rank45Aligned Residues239
% Identity24%Templatec3t6mA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40... ......50.........60........ .70
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Query Sequence  IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLG. . . SFVARKGNKGPKVAVVGHMDEVGFM. . . . . . . . . VT
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Template Sequence  LALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQSPLFVFAGHTDVVPAGPLSQWHTPPFE
Template Known Secondary structure  TS

BTT

TTTTT
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B




GGG
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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   71........80.........90.........100.........110.........120...... ...130.........140.....
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Query Sequence  HIDESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQP. . . . . LSFDEMFIDIGANSREEVE
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Template Sequence  PTVIDGFLHGRG. . AADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGINGTVRVVETLMARNELIDMCIVGEPS
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TTSTT..TTTT
TT
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   87..90........ .100.........110.........120.........130.........140.........150.........160....
 
   146...150.........160.........170.........180.........190.........200.........210.........220.....
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Query Sequence  KRGVEIGNFISPEANFACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHIKPDVVI
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Template Sequence  STLAVGDVVKNG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  BSSSTTS
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   167..170........
 
   226...230.........240.........250.........260.........270.........280.........290.........300.....
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Query Sequence  VLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . RRGGGFLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQM. . GAQV
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GGGGTS



SS

SS
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   179180.........190.........200.........210.........220.... ....
 
   306...310.........320.........330.........340.
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Query Sequence  VALCLPTRYLHANSGMISKADYEALLTLIRGFLTTL
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Template Sequence  VELGPVNATIHKVNECVRIADLEKLTDMYQKTLNHL
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SB
TTTTSTT
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   229230.........240.........250.........260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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