Job Description P32153 Confidence 99.11% Date Thu Jan 5 11:49:33 GMT 2012 Rank 67 Aligned Residues 243 % Identity 14% Template c3pb6X_ PDB info PDB header:transferase Chain: X: PDB Molecule:glutaminyl-peptide cyclotransferase-like protein; PDBTitle: crystal structure of the catalytic domain of human golgi-resident2 glutaminyl cyclase at ph 6.5 Resolution 1.05 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.												.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.										.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																							.	.										.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		S	A	V	S	G	D	E	Q	E	V	R	D	I	L	I	N	T	L	E	P	C	.	.	V	N	E	I	T	F	D	G	L	.	.	.	.	.	.	.	.	.	.	.	G	S	F	V	A	R	K	G	N	K	G	P	.	K	V	A	V	V	G	H	M	D	E	V	G	F	M	V	T	H	I	D	E	S	G	F	L
Query Conservation																							.	.										.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																							.	.										.	.	.	.	.	.	.	.	.	.	.													.													.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		T	P	G	S	P	G	N	L	Q	V	R	K	F	L	E	A	T	L	R	S	L	T	A	G	W	H	V	E	L	D	P	F	T	A	S	T	P	L	G	P	V	D	F	G	N	V	V	A	T	L	D	P	R	A	A	R	H	L	T	L	A	C	H	Y	D	S	K	L	.	.	.	.	.	.	F	P	P	G	S	T
Template Known Secondary structure			T	T	S																	S	T	T														T	T												S		T	T	S	S														.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.							.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.																						.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.																						.	.	.	.	.	.	.
Query Sequence		R	F	T	T	I	G	G	W	W	N	Q	S	M	L	N	H	R	V	T	I	R	T	H	K	.	.	.	.	.	G	V	K	I	P	G	V	I	G	S	V	A	P	H	A	L	T	E	K	Q	K	.	.	.	.	.	.	.	Q	Q	P	L	S	F	D	E	M	F	I	D	I	G	A	N	S	R	E	E	V	E	K
Query Conservation																										.	.	.	.	.																						.	.	.	.	.	.	.
Alig confidence						.	.																			.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		P	F	V	G	.	.	A	T	D	S	A	V	P	C	A	L	L	L	E	L	A	Q	A	L	D	L	E	L	S	R	A	K	K	Q	A	A	P	V	T	L	Q	L	L	F	L	D	G	E	E	A	L	K	E	W	G	P	K	D	S	L	Y	G	S	R	H	L	A	Q	L	M	E	S	I	P	H	S	P	G	P	T
Template Known Secondary structure						.	.	T	T	T	T														T										T	T		S									S			S		S	S			S	T	T	S	S														S	B		S	S		S	B
Template Predicted Secondary structure						.	.
Template SS confidence
		180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	V	E	I	G	N	F	I	S	P	E	A	N	F	A	C	W	G	E	D	K	V	V	G	K	A	L	D	N	R	I	G	C	A	M	M	A	E	L	L	Q	T	V	N	N	P	E	I	T	L	Y	G	V	G	S	V	E	E	E	V	G	L	R	G	A	Q	T	S	A	E	H	I	K	P	D	V	V	I	V
Query Conservation
Alig confidence								.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	Q	A	I	E	.	.	L	F	M	L	L	D	L	L	G	A	P	N	P	T	F	Y	S	H	F	P	R	T	V	R	W	F	H	R	L	R	S	I	E	K	R	L	H	R	L	N	L	L	Q	S	H	P	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	T			.	.							S		S	S	S	S			B					G	G	G																	T	T			S	S			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	A	V	A	G	D	V	P	G	I	D	N	I	K	Y	P	L	K	L	G	Q	G	P	G	L	M	L	F	D	K	R	Y	F	P	N	Q	K	L	V	A	A	L	K	S	C	A	A	H	N	D	L	P	L	Q	F	S	T	M	K	T	G	A	T	D	G	G	R	Y	N	V	M	G	G	G	R	P	V	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	Y	F	Q	P	G	E	P	F	G	S	V	E	D	D	H	I	P	F	L	R	R	.	.	G	V	P	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	B		S	S		S	S				S		T	T					T	T	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
																																																				312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.
		307	.	.	310	.	.	.			.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure									.	.							.	.	.
Query SS confidence									.	.							.	.	.
Query Sequence		A	L	C	L	P	T	R	.	.	Y	L	H	A	N	S	.	.	.	G	M	I	S	K	A	D	Y	E	A	L	L	T	L	I	R	G	F	L	T	T	L
Query Conservation									.	.							.	.	.
Alig confidence									.	.							.	.	.
Template Conservation
Template Sequence		H	L	I	S	T	P	F	P	A	V	W	H	T	P	A	D	T	E	V	N	L	H	P	P	T	V	H	N	L	C	R	I	L	A	V	F	L	A	E	Y
Template Known Secondary structure						S	S			T	T	T	T	S	T	T		S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions