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Job DescriptionP32153
Confidence100.00%DateThu Jan 5 11:49:33 GMT 2012
Rank40Aligned Residues299
% Identity11%Templatec3khzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10......... 20.........30.........40.........50.........60........
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Query Sequence  IELLQQLCEASAVSGDE. . . . . . . . . . . . QEVRDILINTLEPCVNEITFDGLGSFVARKGNKGPKVAVVGHMDEVGFM. .
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Template Sequence  INDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDG
Template Known Secondary structure  TS

B

TTS

SSSTT
TT

TTT
SS


B



TT
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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   6970.........80.........90.........100.........110.........120.........130.........140...
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Query Sequence  . . . . . VTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREE
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Template Sequence  WDSNPFEPVVTEDAIIARG. . TLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEES. DWKCTDRYFKTEEMPTLGF
Template Known Secondary structure 
SS
TTS

SSSTT..STTTTT


SS

TT
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S
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   94.....100.........110.. .......120.........130.........140.........150. ........160.........170
 
   144.... .150
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Query Sequence  VEKRG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VE
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Template Sequence  APDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQG
Template Known Secondary structure 
TT
SS
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B










S
SSSB


SS
STT

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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   151........160.........170.........180.........190..... ....200.........210.
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Query Sequence  IGNFISPEANFACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEI. . . . . . . . . . . . . . . . . . . TLYGVGSVEEEVGLRG
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Template Sequence  DSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTT
Template Known Secondary structure  TT
B

BTTS
TTSB
TTS
B
TTT
TTSGGGT


TTT
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   251........260.........270.........280.........290.........300.........310.........320.........330
 
   212.......220.........230.........240...... ...250.........260.........270.........280....
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Query Sequence  AQTSAEHIKPDVVIVLDTAVAGDVPGIDNIKYPLK. . . . . . . LGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFS
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Template Sequence  NIGVITYDNENAGLFGINLAYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRN. . . . . . . .
Template Known Secondary structure  TTT
TT

TGGGT

B

GGG
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   331........340.........350.........360.........370.........380.........390.........400..
 
   285....290.........300.........310.........320.........330.........340.
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Query Sequence  TMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYEALLTLIRGFLTTL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTHQKNEYITKKQLFNATSIYLEAIYSL
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SS
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   403......410.........420.........430
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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