Job Description P32153 Confidence 100.00% Date Thu Jan 5 11:49:33 GMT 2012 Rank 14 Aligned Residues 331 % Identity 16% Template c3ic1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.										.	70
Predicted Secondary structure																																											.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		I	E	L	L	Q	Q	L	C	E	A	S	A	V	S	G	D	E	Q	E	V	R	D	I	L	I	N	T	L	E	P	C	V	N	E	I	T	F	D	G	L	G	.	.	.	S	F	V	A	R	K	G	N	K	G	P	K	V	A	V	V	G	H	M	D	E	V	G	F	M	.	.	.	.	.	.	.	.	.	V	T
Query Conservation																																											.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	L	A	Q	D	L	I	R	R	P	S	I	S	P	N	D	E	G	C	Q	Q	I	I	A	E	R	L	E	K	L	G	F	Q	I	E	W	M	P	F	N	D	T	L	N	L	W	A	K	H	G	T	S	E	P	V	I	A	F	A	G	H	T	D	V	V	P	T	G	D	E	N	Q	W	S	S	P	P	F	S
Template Known Secondary structure										T	S			B	T	T			T	T											T	T	T								B	T	T	B								S	S	S	S	S										B						G	G	G		S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130													.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	D	E	S	G	F	L	R	F	T	T	I	G	G	W	W	N	Q	S	M	L	N	H	R	V	T	I	R	T	H	K	G	V	K	I	P	G	V	I	G	S	V	A	P	H	A	L	T	E	K	Q	K	Q	Q	P	L	S	F	D	.	.	.	.	.	.	.	.	.	.	.	.	E	M	F	I	D	I	G	A
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		A	E	I	I	D	G	M	L	Y	G	R	G	.	.	A	A	D	M	K	G	S	L	A	A	M	I	V	A	A	E	E	Y	V	K	A	N	P	N	H	K	G	T	I	A	L	L	I	T	S	D	E	E	A	T	A	K	D	G	T	I	H	V	V	E	T	L	M	A	R	D	E	K	I	T	Y	C	M	V	G	E
Template Known Secondary structure						T	T				S	T	T	.	.	T	T	T	T																			T	T		S	S								S		S	S	S			S	S	S											T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	R	E	E	V	E	K	R	G	V	E	I	G	N	F	I	S	P	E	A	N	F	A	C	W	G	E	D	K	V	V	G	K	A	L	D	N	R	I	G	C	A	M	M	A	E	L	L	Q	T	V	N	N	P	E	I	T	L	Y	G	V	G	S	V	E	E	E	V	G	L	R	G	A	Q	T	S	A	E	H
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		P	S	S	A	K	N	L	G	D	V	V	K	N	G	R	R	G	S	I	T	G	N	L	Y	I	Q	G	I	Q	Y	P	H	L	.	.	.	.	A	E	N	P	I	H	K	A	A	L	F	L	Q	E	L	T	T	Y	Q	W	D	K	G	N	E	F	F	P	P	T	S	L	Q	I	A	N	I	H	A	G	T	G	S
Template Known Secondary structure				B	S	S	S	T	T	S																									.	.	.	.	T	T																						B	T	T	B
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																														.	.	.	.	.																	.	.	.
Query SS confidence																														.	.	.	.	.																	.	.	.
Query Sequence		I	K	P	D	V	V	I	V	L	D	T	A	V	A	G	D	V	P	G	I	D	N	I	K	Y	P	L	K	.	.	.	.	.	L	G	Q	G	P	G	L	M	L	F	D	K	R	Y	F	P	.	.	.	N	Q	K	L	V	A	A	L	K	S	C	A	A	H	N	D	L	P	L	Q	F	S	T	M	K	T	G	A
Query Conservation																														.	.	.	.	.																	.	.	.
Alig confidence																														.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		V	I	P	A	E	L	Y	I	Q	F	N	L	R	Y	C	T	E	V	T	D	E	I	I	K	Q	K	V	A	E	M	L	E	K	H	N	L	K	Y	R	I	E	W	N	L	S	G	K	P	F	L	T	K	P	G	K	L	L	D	S	I	T	S	A	I	E	E	T	I	G	I	T	P	K	A	E	T	G	G	G	T
Template Known Secondary structure					S												T	T	S																T	T																		S	S															S										S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	G	G	R	Y	N	V	M	G	G	G	R	P	V	V	A	L	C	L	P	T	R	Y	L	H	A	N	S	G	M	I	S	K	A	D	Y	E	A	L	L	T	L	I	R	G	F	L	T	T	L
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		S	D	G	R	F	I	A	L	M	.	.	G	A	E	V	V	E	F	G	P	L	N	S	T	I	H	K	V	N	E	C	V	S	V	E	D	L	G	K	C	G	E	I	Y	H	K	M	L	V	N	L
Template Known Secondary structure			S					G	G	G	.	.	T								S	B		T	T	T	T	S	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions