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Job DescriptionP32153
Confidence100.00%DateThu Jan 5 11:49:33 GMT 2012
Rank25Aligned Residues339
% Identity12%Templatec2zogA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10........ .20.........30.........40... ......50. ........60
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Query Sequence  IELLQQLCEASAVSGD. . . . . . EQEVRDILINTLEPCVNEITFDGLG. . . . . . . . . . . . . . SFVARKGN. . KGPKVAVVG
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Template Sequence  VKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYG
Template Known Secondary structure  S

BTT
GGGTT




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TTS
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   1920.........30.........40.........50.........60.........70.........80.........90........
 
   61....... .70.........80.........90.........100.........110.........120.........130.
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Query Sequence  HMDEVGFM. . . . . . . . . VTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDE
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Template Sequence  HLDVQPAALEDGWDSEPFTLVEREGKLYGRGST. . DDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEESGSEGLDEL
Template Known Secondary structure 

B



GGGT
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TTS
TTSTTTT..TTTT


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GGGT
TT
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   99100.........110.........120.........130. ........140.........150.........160.........170......
 
   132 .......140.........150.........160.........170... ......180.........190......
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Query Sequence  M. . . . . . . . . . . . FIDIGANSREEVEKRGVEIGNFISPEANFACWGEDKVVGKA. . . LDNRIGCAMMAELLQTVNNPEIT
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Template Conservation              
                
    

     
 
 
     


       


      
  
      
Template Sequence  IFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGK
Template Known Secondary structure  TTTTTTTT




B
SSSSS



SS
TTTS

TTSB
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   177..180.........190.........200.........210.........220.........230.........240.........250......
 
   197..200.. .......210.. .......220....
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Query Sequence  LYGVGS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VEEEVGLRGA. . QTSAEHIKPDVV
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Template Sequence  ILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV
Template Known Secondary structure  B
STTTTTTS



TSS



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SS
S
SSTS
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S
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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   225....230.........240...... ...250.........260.........270.........280.........
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Query Sequence  IVLDTAVAGDVPGIDNIKYPLK. . . . . . . . . . . . . . . LGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTG
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Template Conservation      
 
             
                          
     
  
   
  
     
         
Template Sequence  VGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPHYQAGRRALKTVFGVEPDLTREGG
Template Known Secondary structure 
TT

TT


S



TTSSS

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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   290.........300.........310.... .....320.........330.........340...
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Query Sequence  ATDGGRYNVMGGGRPVVALCLPTRY. . LHANSGMISKADYEALLTLIRGFLTTLTA
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Template Conservation              
   
  
 
      
   
 
 
  
     

  

  
  
Template Sequence  SIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQ
Template Known Secondary structure 

T
S


B
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TTSTT
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   417..420.........430.........440.........450.........460.........470..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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