Job Description P32153 Confidence 99.82% Date Thu Jan 5 11:49:33 GMT 2012 Rank 58 Aligned Residues 335 % Identity 19% Template c2gljR_ PDB info PDB header:hydrolase Chain: R: PDB Molecule: PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.															.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query Sequence		E	L	L	Q	Q	L	C	E	A	S	A	V	S	G	D	E	Q	E	V	R	D	I	L	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	E	P	C	V	N	E	I	T	F	D	G	L	G	S	F	V	A	R	K	G	N	K	G	P	K	.	.	.	.	V	A	V	V	G	H	M	D	E	V
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		R	F	K	N	F	I	S	N	C	K	T	E	R	E	C	V	T	E	L	I	K	T	A	E	K	S	G	Y	R	N	I	E	D	I	L	A	K	G	E	T	L	K	E	G	D	K	V	Y	A	N	N	R	G	K	G	L	I	M	F	L	I	G	K	E	P	L	Y	T	G	F	K	I	L	G	A	H	I	D	S	P
Template Known Secondary structure														S	S	T								S			S	S				T	T				S	T	T	T	T			T	T								T	T	T									S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.											.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.											.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		G	F	M	V	T	H	I	D	E	S	.	.	.	.	.	G	F	L	R	F	T	T	I	G	G	.	.	.	.	.	.	W	W	N	Q	S	M	L	N	H	R	V	T	I	R	T	H	K	G	V	K	I	.	.	.	.	.	.	.	.	.	P	G	V	I	G	S	V	A	P	H	A	L	T	E	K	Q	K	Q	Q
Query Conservation												.	.	.	.	.											.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.											.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	D	L	K	Q	N	P	L	Y	E	D	T	D	L	A	M	L	E	T	H	Y	Y	G	G	I	K	K	Y	Q	W	V	T	L	P	L	A	I	H	G	V	I	V	K	K	D	G	T	I	V	N	V	C	V	G	E	D	D	N	D	P	V	F	G	V	S	D	I	L	V	H	L	A	S	E	Q	L	E	K	K
Template Known Secondary structure		B	B				S	S						S	S	S								B	S				S				S	S	S											T	T								B	S		S	T	T	S			B							G	G	G	G	G	G	T	T	S		T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		126	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.																.	.	.	.	.	.	150	.	.	.	.	.	.	.	.									.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		P	L	S	F	.	.	.	D	E	M	F	I	D	I	G	A	N	S	R	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	K	R	G	V	E	I	G	N	F	I	S	P	E	.	.	.	.	.	.	.	.	A	N	F	A	C	W	G	E	D	K	V	V	G	K	A	L	D	N	R	I	G
Query Conservation						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	K	V	I	E	G	E	D	L	N	I	L	I	G	S	I	P	L	K	D	G	E	E	K	Q	K	V	K	H	N	I	M	K	I	L	N	E	K	Y	D	I	S	E	E	D	F	V	S	A	E	L	E	I	V	P	A	G	K	A	R	D	Y	G	F	D	R	S	M	V	M	G	Y	G	Q	D	D	R	I	C
Template Known Secondary structure		T		S	S			S								S				S	T	T				S														S	S				S	T	T	G	G	G	B								S						S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																			.	.	.	.	.	.	230	.	.				.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		C	A	M	M	A	E	L	L	Q	T	V	N	N	P	E	I	T	L	Y	G	V	G	S	V	E	E	E	V	G	L	R	G	A	Q	T	S	A	E	H	I	K	P	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	V	L	D	T	A	V	A	.	.	.	G	D	V	P	G	I
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		A	Y	T	S	F	E	A	M	L	E	M	K	N	A	K	K	T	C	I	T	I	L	V	D	K	E	E	V	G	S	I	G	A	T	G	M	Q	S	K	F	F	E	N	T	V	A	D	I	M	S	D	E	L	K	L	R	K	A	L	Y	N	S	E	M	L	S	S	D	V	S	A	A	F	D	P	N	Y	P	N	V
Template Known Secondary structure											T			S		S	S										G	G	G	T			T	T	T	T	S	S	S	T	T									T				S								T						B					B			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.						.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																																.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																																.	.	.	.	.
Query Sequence		D	N	I	K	Y	P	L	K	L	G	Q	G	P	G	L	M	L	.	.	.	.	.	.	F	D	K	R	Y	F	P	N	Q	K	L	V	A	A	L	K	S	C	A	A	H	N	D	L	P	L	Q	F	S	T	M	.	.	.	.	.	K	T	G	A	T	D	G	G	R	Y	N	V	M	G	G	G	R	P	V	V	A
Query Conservation																			.	.	.	.	.	.																																.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																.	.	.	.	.									.	.
Template Conservation																																																																					.	.
Template Sequence		M	E	K	R	N	S	A	Y	L	G	K	G	I	V	F	N	K	Y	T	G	S	R	G	K	S	G	C	N	D	A	N	P	E	Y	I	A	E	L	R	R	I	L	S	K	E	S	V	N	W	Q	T	A	E	L	G	K	V	D	Q	G	G	G	G	T	I	A	Y	.	.	I	L	A	E	Y	G	M	Q	V	I	D
Template Known Secondary structure		S		S	T	T	S	B		T	T	S					B	S				S	T	T	S		S	S																		T									S	S	S	S	S	S	S					T			.	.				T	T	T		B			B
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	L	P	T	R	Y	L	H	A	N	S	G	M	I	S	K	A	D	Y	E	A	L	L	T	L	I	R	G	F	L	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	V	A	L	L	N	X	H	A	P	W	E	I	S	S	K	A	D	I	Y	E	T	K	N	G	Y	S	A	F	L	N	N
Template Known Secondary structure		B						S	T	T	S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions