Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEX9
Confidence100.00%DateThu Jan 5 11:24:34 GMT 2012
Rank30Aligned Residues358
% Identity28%Templated1ursa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.45

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32...... .40.........50..... ....60.... .....70.........80....... ..90.........100......
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Query Sequence  KLVIWIN. GDKGYNGLAEVGKKFEK. DTGIKVTVE. . HPDKLEEKFPQVAATGDGPDIIF. WAHDRFGGYAQSGLLAEIT
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Template Sequence  TITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPVP
Template Known Secondary structure  S




TT
TT
TTTT


SGGGTT
B



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   31........40.........50.........60.........70.........80.........90.........100.........110
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL
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Template Sequence  SGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKDANAH. . . . . . GFMYDQANLYFDYAI
Template Known Secondary structure  TTS

GGGS
TTTT
S
TTT
SS


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TT
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   111........120.........130.........140.........150.........160......... 170.........180....
 
   187..190.........200.........210.........220.........230.. .......240.........250.........260.....
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Query Sequence  IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA. DTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK
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Template Sequence  IGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAK
Template Known Secondary structure  TT
TTSSSTS
S

TT

TT

S
GGGTT
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   266...270....... ..280.........290.........300.........310.........320.........330.........340....
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Query Sequence  VNYGVTVLPTFK. GQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIA
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Template Sequence  IDFGVTPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFK
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TTS




BTT
S
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SSTST
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   265....270.........280.........290.........300.........310.........320.........330.........340....
 
   345....350.........360.........370.........380.........390......
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Query Sequence  ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK
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Template Sequence  AFVEQLRYAVPMPNIPQMQAVWQAM. SILQNIIAGKVSPEQGAKDFVQNIQK
Template Known Secondary structure  GGG



STT.TTSS

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   345....350.........360......... 370.........380.........390.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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