Job Description P0AEX9 Confidence 99.97% Date Thu Jan 5 11:24:34 GMT 2012 Rank 60 Aligned Residues 278 % Identity 21% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		K	L	V	I	W	I	N	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	G	I	K	V	T	V	E	H	P	D	.	.	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A	E	I	T	P	D	K
Query Conservation																																						.	.
Alig confidence								.	.																													.	.																																									.	.
Template Conservation								.	.																																																																							.	.
Template Sequence		D	I	T	V	Y	N	.	.	G	Q	Q	K	E	A	A	T	A	V	A	K	A	F	E	Q	E	T	G	I	K	V	T	L	N	S	G	K	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L	A	P	I	S	E	.	.
Template Known Secondary structure								.	.		S																S																						G	G	G				S					S		G	G	G							T	T		B						.	.
Template Predicted Secondary structure								.	.																																																																							.	.
Template SS confidence
		1	.	.	.	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		A	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	.	.	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P	Y	F	T	W	P	L	I
Query Conservation																																											.	.
Alig confidence		.	.	.																																							.	.												.	.	.	.
Template Conservation		.	.	.																																																				.	.	.	.
Template Sequence		.	.	.	Q	T	I	Q	Q	T	A	Q	K	G	V	P	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	A	T	P	.	.	.	.	K	W	K	G	K	I	G	Y	V	S	T	S	G	A	F	L	E	Q	V	V	A	L
Template Known Secondary structure		.	.	.					T	T			T	T					T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	G	S	G	.	.	.	.	G	G	T	T	T					T	T	S
Template Predicted Secondary structure		.	.	.																																																				.	.	.	.
Template SS confidence
					77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S	K	V	N
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		S	K	M	K	G	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	L	N	W	L	K	G	L	K	E	N	G	K	L	Y	A	K	.	.	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W	Y	N	L	A	K	E	K	G	V
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	S	S	.	.										T	T	S		S																		G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		150	.	.	.	.	.	.																						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		Y	G	V	T	V	L	P	T	F	.	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A	L	K	S	Y	E	E	E	L	A	K	D	P	R	I
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		E	N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S	Y	S	G	A	A	V	L	K	A	S	K	N	Q	A	E	A	Q	K	F	V	D	F	L	A	S	K	K	G	Q	E	A	L	V	A	A	R	A	E	Y	P	L	R	A	D	V	V	S	P	F	N	L	E	P	Y	E	K	L
Template Known Secondary structure		G	G		S								T	T		G	G	G										B	T	T		S														S											S							.					T	T
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions