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Job DescriptionP0AEX9
Confidence100.00%DateThu Jan 5 11:24:34 GMT 2012
Rank11Aligned Residues367
% Identity98%Templatec3py7A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution
Resolution2.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   2930.........40.........50.........60.........70.........80.........90.........100........
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Query Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPD
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Template Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPA
Template Known Secondary structure 
TT

TTS
S


TTTT
S
SGGGTT
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  KAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
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Template Sequence  AAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
Template Known Secondary structure  TTB
TTT
S

TTT
SS

SBGGGTTT




SS
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   189190.........200.........210.........220.........230.........240.........250.........260........
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Query Sequence  ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
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Template Sequence  ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNY
Template Known Secondary structure  TT
TTSSSTTSS
TT

TTS
GGGSS

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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   269270.........280.........290.........300.........310.........320.........330.........340........
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Query Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATME
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Template Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATME
Template Known Secondary structure 


TT


BTT
S
TTSSS


SBTTS
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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   349350.........360.........370.........380.........390.....
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Query Sequence  NAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRIT
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Template Sequence  NAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA
Template Known Secondary structure  TS


STTTSS
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   324.....330.........340.........350.........360.........370
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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