Job Description P0AEX9 Confidence 99.95% Date Thu Jan 5 11:24:34 GMT 2012 Rank 64 Aligned Residues 284 % Identity 12% Template c3cfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.70 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																												.																																		.
Query SS confidence																												.																																		.
Query Sequence		E	G	K	L	V	I	W	I	N	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	.	D	T	G	I	K	V	T	V	E	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	.	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A	E	I	T	P
Query Conservation																												.																																		.
Alig confidence										.																		.													.																					.
Template Conservation										.																															.
Template Sequence		K	I	V	L	K	I	F	H	.	A	G	S	L	S	V	P	F	E	E	Y	E	K	M	F	E	K	E	H	P	N	V	D	V	E	R	E	P	A	G	.	S	V	A	C	V	R	K	I	I	D	L	G	K	K	A	D	I	L	A	S	A	D	Y	S	L	I	P	Q	M	M	M	P	K	Y	A	D	W	Y	V	M
Template Known Secondary structure										.		G	G	G																T	T										.										T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure										.																															.
Template SS confidence
		37	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
					108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	K	A	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P	Y	F	T	W
Query Conservation		.	.	.
Alig confidence		.	.	.																																																																													.
Template Conservation																																																																																	.
Template Sequence		F	A	R	N	E	I	V	L	A	Y	T	D	K	S	K	Y	K	D	E	I	N	S	T	N	W	Y	K	I	L	Q	R	P	D	V	K	I	G	F	S	N	P	N	D	D	P	C	G	Y	R	T	Q	M	V	L	Q	L	A	E	L	Y	Y	K	D	P	T	I	Y	D	N	L	V	L	K	H	S	N	I	K	V	.
Template Known Secondary structure													T	T	S	T	T	T	T	T			T	T	T					T	T	S	T	T								T	T	T																			T		T	T						T	G	G	G	B	S				.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S
Query Conservation
Alig confidence		.	.	.	.	.	.																																																	.	.
Template Conservation		.	.	.	.	.	.																																																	.	.
Template Sequence		.	.	.	.	.	.	E	E	N	N	G	T	Y	L	I	L	V	P	K	E	L	D	V	D	T	N	K	L	F	V	R	S	K	E	T	D	L	L	A	P	L	E	A	G	A	F	D	Y	L	F	I	Y	K	S	.	.	V	A	N	Q	H	H	L	K	Y	I	E	L	P	K	E	I	N	L	G	Y	Y	E	Y	A
Template Known Secondary structure		.	.	.	.	.	.				T	T								S	S			B		T	T	T					S	S	G	G	G	G						T	T	S	S	S								.	.					T	T								T	T	T	S	S			G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.																																																	.	.
Template SS confidence
								194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A
Query Conservation
Alig confidence																																																				.	.	.
Template Conservation																																																				.	.	.
Template Sequence		D	T	Y	K	K	V	A	L	K	I	I	A	K	N	K	T	I	N	A	K	P	I	V	Y	G	M	T	V	P	T	N	A	P	H	K	K	E	A	I	E	F	V	K	F	V	L	G	H	P	E	.	.	.	V	L	E	N	N	G	Q	P	A	I
Template Known Secondary structure					T	T						G	G	G	T																T	T		T	T															T		.	.	.				T	T	T			B
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions