Job Description P0AEX9 Confidence 100.00% Date Thu Jan 5 11:24:34 GMT 2012 Rank 41 Aligned Residues 359 % Identity 16% Template c2w7yA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. Resolution 2.35 Å

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		32	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.
Predicted Secondary structure									.	.	.	.	.	.																		.													.																													.
Query SS confidence									.	.	.	.	.	.																		.													.																													.
Query Sequence		K	L	V	I	W	I	N	.	.	.	.	.	.	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	.	D	T	G	I	K	V	T	V	E	H	P	D	.	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	.	Y	A	Q	S	G	L	L
Query Conservation									.	.	.	.	.	.																		.													.																													.
Alig confidence									.	.	.	.	.	.																		.													.																													.
Template Conservation
Template Sequence		V	L	E	F	Y	H	G	Y	H	H	S	E	D	E	W	P	V	A	K	T	X	R	D	L	Y	D	K	F	A	E	E	H	S	G	V	E	F	K	P	T	P	V	N	G	D	L	K	D	I	X	N	N	K	V	A	S	G	E	F	P	D	V	I	D	L	A	G	N	A	V	S	L	A	A	I	E	Q	K	L	V
Template Known Secondary structure								S					T	T	T																					S								S	S											T	T	T				S					T	T										T	T		B
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		103	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure							.	.																																										.	.	.	.	.	.	.
Query SS confidence							.	.																																										.	.	.	.	.	.	.
Query Sequence		A	E	I	T	P	.	.	D	K	A	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	.	.	.	.	.	.	.	P	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L
Query Conservation							.	.																																										.	.	.	.	.	.	.
Alig confidence							.	.																																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	L	K	P	Y	I	D	S	N	K	L	E	K	N	V	G	L	N	Y	K	Q	N	Q	K	D	G	K	I	Y	T	V	H	E	Q	L	F	T	X	G	L	W	Y	N	K	D	I	F	A	K	A	G	A	K	T	P	D	Q	W	N	T	W	D	D	F	T	Q	A	X	A	S	I	R	K	Q	D	G	V	Y	A
Template Known Secondary structure											T	T						T	T					T			T	T					B		S	B																	T				G	G	G			S													T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		M	F	N	L	Q	E	P	Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	.	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I
Query Conservation																																																													.
Alig confidence			.	.																																																									.
Template Conservation			.	.
Template Sequence		F	.	.	G	A	G	E	P	S	I	R	L	F	N	T	V	L	G	T	T	E	N	G	R	K	L	L	D	K	P	L	T	K	E	G	I	E	S	K	E	F	A	D	A	L	K	X	V	X	K	E	I	Q	A	N	G	S	K	N	A	G	G	D	A	N	A	Y	S	K	D	F	Q	E	G	K	S	A	V	F	F
Template Known Secondary structure			.	.			B	T	T										T	T	S							T	T	S				T	T	T	T	T	S																	T		G	G	G		S	B											T	T	S
Template Predicted Secondary structure			.	.
Template SS confidence
		199			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	P	W	A	W	S	N	I	D	T	S	K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A	L	K	S
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		N	G	V	W	A	S	G	E	X	S	K	.	.	.	N	P	S	L	A	P	G	I	Y	P	A	G	V	A	I	S	S	S	G	G	G	I	T	I	S	S	K	X	S	E	A	K	Q	K	L	A	L	E	F	L	K	Y	X	T	S	D	D	V	Q	K	V	I	F	E	K	V	G	A	N	P	S	N	E	N	V	N
Template Known Secondary structure				G	G	G					T	T	.	.	.	S	T	T						B	G	G	G													B	S	S	S																T	S										T	S		S		B	S		T	T	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		333	.	.	.	.	.	.	340						.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																							.	.	.
Query SS confidence										.	.	.	.	.																							.	.	.
Query Sequence		Y	E	E	E	L	A	K	D	.	.	.	.	.	P	R	I	A	A	T	M	E	N	A	Q	K	G	E	I	M	P	N	I	P	Q	M	.	.	.	S	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R	Q	T	V	D	E	A	L	K	D	A	Q	T	R	I	T
Query Conservation										.	.	.	.	.																							.	.	.
Alig confidence										.	.	.	.	.																							.	.	.
Template Conservation
Template Sequence		V	K	E	L	S	E	K	S	S	E	A	T	T	K	I	L	G	Q	A	I	T	Q	V	K	N	A	K	A	V	V	P	T	V	S	D	V	W	G	G	D	V	H	T	A	I	I	N	A	L	T	E	S	A	A	E	N	V	D	V	D	Q	K	V	K	S	T	Q	D	V	L	K
Template Known Secondary structure								T																		T		S																									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions