Job Description P0AEX9 Confidence 100.00% Date Thu Jan 5 11:24:34 GMT 2012 Rank 48 Aligned Residues 314 % Identity 14% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		K	L	V	I	W	I	N	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	G	I	K	V	T	V	E	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A	E	I	T	P	.	D	K	A
Query Conservation																																																																														.
Alig confidence														.	.	.																																																														.
Template Conservation														.	.	.
Template Sequence		V	L	Y	L	Y	N	W	T	Y	Y	T	P	.	.	.	T	S	L	I	K	K	F	E	Q	Q	Y	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	S	I	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D	L	S	K	I	P
Template Known Secondary structure									T	T	T	S		.	.	.												T									S										S	S	S			S		S					B										T	T							G	G	G		G
Template Predicted Secondary structure														.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	.	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P	Y	F	T	W	P	L	I	A	A
Query Conservation																	.
Alig confidence																	.																																				.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		N	V	Q	F	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	Y	A	R	T	W	S	I	F	S	R	.	.	.	.	.	.	K	D	L	A	Y	R	M	S	M	M	D	D	M	R	E	V	M	G	A	A	L	A	S
Template Known Secondary structure		G	G	G	G	B									T	T	S	T	T		S	S															T	T	T			S			S	S	G	G	G	G	G		.	.	.	.	.	.	G	G	G	T	T	S					S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S	K	V	N	Y	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		L	G	Y	N	V	N	T	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	.	.	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	F	A	E	A	F	F	A	E	T	P	E	A	M	H	E	H
Template Known Secondary structure		T	T			T	T		.	.	.	.	.	.	.	.	.	.	.	.																	T	G	G	G		.	.					S	S	S								T	S		S													S		G	G	G	G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		159	160	.	.	.	.	.													.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A	L	K	S	Y	E	E	E	L	A	K	D	P	R	I	A	A	T	M	E	N
Query Conservation
Alig confidence												.	.	.																																																													.	.	.
Template Conservation												.	.	.																																																													.	.	.
Template Sequence		I	D	F	F	I	P	Q	D	V	A	.	.	.	S	P	V	Y	V	D	S	F	C	I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	G	F	P	S	T	I	H	R	E	A	A	A	Y	Q	K	K	T	P	Y	Y	.	.	.	S	E	H	D
Template Known Secondary structure								T	T	T	T	.	.	.									B			T	T		S													T	S												T				S	S	B	T	T	G	G	G	G			S			S	S	.	.	.		G	G	G
Template Predicted Secondary structure												.	.	.																																																													.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	K	G	E	I	M	P	N	I	P	Q	M	S	A	F	W	Y	A	V	R	T	A	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	R	G	T	L	K	T	D	V	G	A	A	I	E	H	Y	N	A	H	W	N	A	V	R
Template Known Secondary structure		G	S	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions