Job Description P0AEX9 Confidence 100.00% Date Thu Jan 5 11:24:34 GMT 2012 Rank 39 Aligned Residues 361 % Identity 15% Template c2b3fD_ PDB info PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose Resolution 1.56 Å

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		31	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.
Predicted Secondary structure										.																		.											.	.	.	.	.																												.	.
Query SS confidence										.																		.											.	.	.	.	.																												.	.
Query Sequence		G	K	L	V	I	W	I	N	.	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	.	D	T	G	I	K	V	T	V	E	H	.	.	.	.	.	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	.	.	F	G	G	Y	A	Q	S	G	L
Query Conservation										.																		.											.	.	.	.	.																												.	.
Alig confidence										.																		.											.	.	.	.	.																												.	.
Template Conservation
Template Sequence		M	K	L	E	I	F	S	W	W	A	G	D	E	G	P	A	L	E	A	L	I	R	L	Y	K	Q	K	Y	P	G	V	E	V	I	N	A	T	V	T	G	G	A	G	V	N	A	R	A	V	L	K	T	R	M	L	G	G	D	P	P	D	T	F	Q	V	H	A	G	M	E	L	I	G	T	W	V	V	A	N	R
Template Known Secondary structure									S			G	G	G																T	T											G	G	G													T	T				S						T	T					T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		102	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure											.	.	.																																								.	.	.	.	.
Query SS confidence											.	.	.																																								.	.	.	.	.
Query Sequence		L	A	E	I	T	P	D	K	A	.	.	.	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	.	.	.	.	.	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L
Query Conservation											.	.	.																																								.	.	.	.	.
Alig confidence											.	.	.																																								.	.	.	.	.
Template Conservation
Template Sequence		M	E	D	L	S	A	L	F	R	Q	E	G	W	L	Q	A	F	P	K	G	L	I	D	L	I	S	Y	K	G	G	I	W	S	V	P	V	N	I	H	R	S	N	V	M	W	Y	L	P	A	K	L	K	G	W	G	V	N	P	P	R	T	W	D	K	F	L	A	T	C	Q	T	L	K	Q	K	G	L	E	A	P
Template Known Secondary structure		B											T		T	T	T	S											T	T									B			S														T					S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		M	F	N	L	Q	E	P	Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	.	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		L	A	L	G	E	N	W	T	Q	Q	H	L	W	E	S	V	A	L	A	V	L	G	P	D	D	W	N	N	L	W	N	G	K	L	K	F	T	D	P	K	A	V	R	A	W	E	V	F	G	R	V	L	D	C	A	N	K	D	A	A	G	L	S	W	Q	Q	A	V	D	R	V	V	Q	G	K	A	A	F	N	I
Template Known Secondary structure						S																										T	T	S	S		T	T	S															T	T	B		T	T	G	G	G												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		N	G	P	W	A	W	S	N	I	D	T	S	K	V	N	.	.	.	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A
Query Conservation																	.	.	.
Alig confidence																	.	.	.										.
Template Conservation																													.
Template Sequence		M	G	D	W	A	A	G	Y	M	T	T	T	L	K	L	K	P	G	T	D	F	A	W	A	P	S	P	.	G	T	Q	G	V	F	M	M	L	S	D	S	F	G	L	P	K	G	A	K	N	R	Q	N	A	I	N	W	L	R	L	V	G	S	K	E	G	Q	D	T	S	N	P	L	K	G	S	I	A	A	R	L
Template Known Secondary structure				T									T	T				B	T	T	T	B						T	.	T		T	T												B	T	T		T	T												T	S												S		B		S	S	T
Template Predicted Secondary structure																													.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		L	K	S	Y	E	E	E	L	A	K	D	P	R	I	A	A	T	M	E	N	A	Q	K	G	E	I	M	P	N	I	P	Q	M	S	.	.	.	.	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R	Q	T	V	D	E	A	L	K	D	A	Q	T	R	I	T	K
Query Conservation																																				.	.	.	.
Alig confidence									.	.	.																									.	.	.	.																		.
Template Conservation									.	.	.																																														.
Template Sequence		D	S	D	P	S	K	Y	.	.	.	N	A	Y	G	Q	S	A	M	R	D	W	R	S	N	R	I	V	G	S	L	V	H	G	A	V	A	P	E	S	F	M	S	Q	F	G	T	V	M	E	I	F	L	Q	T	R	.	N	P	Q	A	A	A	N	A	A	Q	A	I	A	D	Q
Template Known Secondary structure		T			G	G	G	S	.	.	.														S						T	T	T	T	S	S	S																				.
Template Predicted Secondary structure									.	.	.																																														.
Template SS confidence
		320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions