Job Description P31060 Confidence 98.50% Date Thu Jan 5 11:46:56 GMT 2012 Rank 94 Aligned Residues 190 % Identity 19% Template c3qkuB_ PDB info PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp Resolution 3.30 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		T	F	R	L	S	D	T	K	T	L	Q	L	P	Q	L	T	L	N	A	G	D	S	W	A	F	V	G	S	N	G	S	G	K	S	A	L	A	R	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	L	P	L	L	K	G	E	R	Q	S	Q	F	S	H	I	T	R	L	S	F	E	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																						.
Template Sequence		R	V	T	V	K	N	F	R	S	H	S	D	T	V	V	E	F	K	E	G	.	I	N	L	I	I	G	Q	N	G	S	G	K	S	S	L	L	D	A	I	L	V	G	L	Y	W	P	L	R	I	K	D	I	K	K	D	E	F	T	K	V	G	A	R	D	T	Y	I	D	L	I	F	E	K	D	G	T	K	Y	R
Template Known Secondary structure									T	T										S		.								T	T	S	S														S	S				T	T			T	T	T	T	B		T	T													S	S
Template Predicted Secondary structure																						.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																																																74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	Q	K	L	V	S	D	E	W	Q	R	N	N	T	D	M	L	G	P	G	E	D	D	T	G	R	T	T	A	E	I	I	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	R	R	F	L	K	G	Y	S	S	G	E	I	H	A	M	K	R	L	V	G	N	E	W	K	H	V	T	E	P	S	S	K	A	I	S	A	F	M	E	K	L	I	P	Y	N	I	F	L	N	A	I	Y	I	R	Q	G	Q	I	D	A	I	L	E	S	D	E	A	R	E	K	V	V	R	E	V	L	A	A
Template Known Secondary structure								T	T		S	S											T	T						S		S	S												S								T	T				T	T		S	S	T	T	S	S															T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	V	K	D	A	P	R	C	M	Q	L	A	Q	Q	F	G	I	T	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	R	F	K	Y	L	S	T	G	E	T	R	K	T	L	L	C	Q	A	L	M	S	E	P	D	L	L	I	L	D	E	P
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	K	I	G	E	L	A	S	E	I	F	A	E	F	T	E	G	K	Y	S	E	V	V	V	R	A	E	E	N	K	V	R	L	F	V	V	W	E	G	K	E	R	P	L	T	F	L	S	G	G	E	R	I	A	L	G	L	A	F	R	L	A	M	S	L	Y	L	A	G	E	I	S	L	L	I	L	D	E	P
Template Known Secondary structure																		T	T	S	S									S	S									T	T					G	G	G	S																				S	T	T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	G	L	D	V	A	S	R	Q	Q	L	A	E	R	L	A	S	L	H	Q	S	G	I	T	L	V	L	V	L	N	R	F	D	E	I	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	Y	L	D	E	E	R	R	R	K	L	I	T	I	M	E	R	Y	L	K	K	I	P	Q	V	I	L	V	S	H	D	E	E	L	K	D	A
Template Known Secondary structure			S	S																T	T	T	S	S	S							S		S	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		825	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions