Return to main results Retrieve Phyre Job Id

Job DescriptionP31060
Confidence97.47%DateThu Jan 5 11:46:56 GMT 2012
Rank134Aligned Residues151
% Identity10%Templatec3bgwD_
PDB info PDB header:replicationChain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
Resolution3.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100.....
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  LNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEI
Query Conservation 
  

   


 








  
 
      
 
   
                                         
Alig confidence 






































..........






























Template Conservation     
 
  
 
 

 


 
   

   
  
  

  
.......... 

       
  
   

            
Template Sequence  YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS. . . . . . . . . . LEMGKKENIKRLIVTAGSINAQKIKAARRDF
Template Known Secondary structure  B
SS

SSSSTT

..........SSS
S


TTGGGT
Template Predicted Secondary structure 













..........













Template SS confidence 















































































   192.......200.........210.........220.........230 .........240.........250.........260.
 
   106...110.........120........ .130.........140.........150.. .......160. ........170..
Predicted Secondary structure 






..






....




.......





Query SS confidence 






















. .























. . . .








. . . . . . .










Query Sequence  IQDEVKDAPRCMQLAQQFGITAL. . LDRRFKYLSTGETRKTLLCQALMS. . . . EPDLLILDE. . . . . . . PFDGLDVASRQ
Query Conservation                
    
   ..       




 


 

 

  .... 
 





.......

  

     
Alig confidence 






















..







.......








....








.......










Template Conservation                
    
 
          
.......   
             



 
                 
Template Sequence  ASEDWGKLSMAIGEISNSNINIFDKAGQSVNYI. . . . . . . WSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQIS
Template Known Secondary structure 

S
TS


SS
B.......S
SS

SSSSB
S
SSS
Template Predicted Secondary structure 








.......















Template SS confidence 















































































   262.......270.........280.........290.... .....300.........310.........320.........330....
 
   173......180.... .....190...
Predicted Secondary structure 
.


Query SS confidence 











.








Query Sequence  QLAERLASLHQS. GITLVLVLN
Query Conservation   
   
  
   .
 


 


Alig confidence 











.








Template Conservation   
   

 

    
 

   
Template Sequence  QISRDLKKMARELDVVVIALSQ
Template Known Secondary structure  T
Template Predicted Secondary structure 


Template SS confidence 





















   335....340.........350......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions