Job Description P31060 Confidence 97.03% Date Thu Jan 5 11:46:56 GMT 2012 Rank 176 Aligned Residues 151 % Identity 13% Template c2dflA_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament Resolution 2.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	G	D	S	W	A	F	V	G	S	N	G	S	G	K	S	A	L	A	R	A	L	A	G	E	L	P	L	L	K	G	E	R	Q	S	Q	F	S	H	I	T	R	L	S	F	E	Q	L	Q	K	L	V	S	D	E	W	Q	R	N	N	T	D	M	L	G	P	G	E	D	D	T	G	R	T	T	A	E	I
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	T	R	T	M	T	E	F	F	G	E	F	G	S	G	K	T	Q	L	C	H	Q	L	S	V	N	V	Q	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	G	G	L	S	G	K	A	V	Y	I
Template Known Secondary structure		B		T	T	S							S	T	T	S	S	T	T										S	S	S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	S		S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.																																					.	.	.	.	140	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.									.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160													.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	D	E	V	K	D	A	P	R	C	M	Q	L	A	Q	Q	F	G	I	T	.	.	.	.	.	.	.	.	A	L	L	D	R	R	F	K	Y	L	S	T	G	E	T	R	K	T	L	L	C	Q	A	L	M	S	E	P	D	L	L	I	L	D	.	.	.	.	.	.	.	.	.	.	.	.	E	P	F	D	G
Query Conservation																							.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	E	G	T	F	R	W	E	R	I	E	N	M	A	K	A	L	G	L	D	I	D	N	V	M	N	N	I	Y	Y	I	R	A	I	N	T	D	H	Q	I	A	I	V	D	D	L	Q	E	L	V	S	K	D	P	S	I	K	L	I	V	V	D	S	V	T	S	H	F	R	A	E	Y	P	G	R	E	N	L	A
Template Known Secondary structure			S	S	S															T									T								S										T									T	T									T	T							S		T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	D	V	A	S	R	Q	Q	L	A	E	R	L	A	S	L	H	Q	S	.	G	I	T	L	V	L	V	L	N	R	F	D	E	I	P	E	F	V	Q	F	A	G	V	L	A	D	C	T
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		V	R	Q	Q	K	L	N	K	H	L	H	Q	L	T	R	L	A	E	V	Y	D	I	A	V	I	I	T	N	Q	V	M	H	T	L	Y	H	V	P	G	I	R	I	Q	L	K	K	S	R
Template Known Secondary structure																				T	T	T															S	S		S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions