Return to main results Retrieve Phyre Job Id

Job DescriptionP31060
Confidence95.82%DateThu Jan 5 11:46:56 GMT 2012
Rank374Aligned Residues124
% Identity19%Templatec1xxhB_
PDB info PDB header:transferaseChain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex
Resolution3.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  WAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVK
Query Conservation    


 








  
 
      
 
   
                                               
Alig confidence 






















































.....................



Template Conservation   
  

 
 

   
   
  
                          
      .....................    
Template Sequence  YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA. . . . . . . . . . . . . . . . . . . . . ASRT
Template Known Secondary structure 
STTSSS
TT
S
SS

S
ST

TTS.....................S
ST
Template Predicted Secondary structure 


























.....................



Template SS confidence 















































































   41........50.........60.........70.........80.........90..... ....
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  DAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLASLHQSGITLVLV
Query Conservation          
    
          




 


 

 

   
 







  

      
   
  
   
 


 
Alig confidence 




















......................







.



















.






Template Conservation      

 
             ......................

 



 .
     
 
 


 



  .    

 
Template Sequence  KVEDTRDLLDNVQYAPARGRF. . . . . . . . . . . . . . . . . . . . . . KVYLIDEV. HMLSRHSFNALLKTLEEPPE. HVKFLLA
Template Known Secondary structure  TTTT


S
SSSS
......................
TG.GG

S

T.T

Template Predicted Secondary structure 







......................
.





.
Template SS confidence 















































































   100.........110.........120 ........ .130.........140........ .150.....
 
   192.......200
Predicted Secondary structure 


Query SS confidence 








Query Sequence  LNRFDEIPE
Query Conservation 

    
  
Alig confidence 








Template Conservation 
        
Template Sequence  TTDPQKLPV
Template Known Secondary structure  S
TTSS
Template Predicted Secondary structure 





Template SS confidence 








   156...160....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions