Phyre 2 alignment of P31060 with c1wxqA

Job Description P31060
Confidence 99.02% Date Thu Jan 5 11:46:56 GMT 2012

Rank 83 Aligned Residues 269

% Identity 12% Template c1wxqA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																											.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	W	A	F	V	G	S	N	G	S	G	K	S	A	L	A	R	A	L	A	G	E	L	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	G	E	R	Q	S	Q	F	S	H	I	T	R	L	S	F	E	Q	L	Q	K	L	V	S	D	E	W	Q
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	I	G	V	V	G	K	P	N	V	G	K	S	T	F	F	S	A	A	T	L	A	N	V	G	V	T	Y	A	I	T	D	H	P	C	K	E	L	G	C	S	P	N	P	Q	N	Y	E	Y	R	N	G	L	A	L	I	P	V	K	X	V	D	V	A	F	L	D	D	L	R	X	A	S	A	L	I	H	V	V	D
Template Known Secondary structure								T	T	S	S																							S		S	S	S			S				S	S	S				T	T																S	S	T	T		S
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	85	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.																																						.
Query SS confidence								.	.	.	.	.	.	.	.																																						.
Query Sequence	R	N	N	T	D	M	L	.	.	.	.	.	.	.	.	G	P	G	E	D	D	T	G	R	T	T	A	E	I	I	Q	D	E	V	K	D	A	P	R	C	M	Q	L	A	Q	Q	F	G	I	T	A	L	.	L	D	R	R	F	K	Y	L	S	T	G	E	T	R	K	T	L	L	C	Q	A	L	M	S	E	P	D
Query Conservation								.	.	.	.	.	.	.	.																																						.
Alig confidence								.	.	.	.	.	.	.	.																																						.
Template Conservation
Template Sequence	A	T	G	K	T	D	P	E	G	Q	P	T	D	Y	H	D	P	V	E	D	I	E	F	L	E	R	E	I	D	Y	W	I	Y	G	I	L	S	K	G	W	D	K	F	A	K	R	I	K	L	Q	K	I	K	L	E	S	A	I	A	E	H	L	S	G	I	G	V	N	E	N	D	V	W	E	A	X	H	K	L	N
Template Known Secondary structure	T	T			B		T	T	S		B		S																									T	T	T					S	T	T	T	S	S												T	G	G	G	T													T	T
Template Predicted Secondary structure
Template SS confidence
	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

	156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence	L	L	I	L	D	E	P	F	D	G	L	D	V	A	S	R	Q	Q	L	A	E	R	L	A	S	L	H	Q	S	G	I	T	L	V	L	V	L	N	R	F	D	E	I	P	E	F	V	Q	F	A	G	V	L	A	D	C	.	.	.	.	T	L	A	E	T	G	A	K	E	E	L	L	Q	Q	A	L	V	A	Q	L
Query Conservation																																																									.	.	.	.
Alig confidence																				.	.								.	.	.																										.	.	.	.
Template Conservation																				.	.								.	.	.
Template Sequence	L	P	E	D	P	T	K	W	S	Q	D	D	L	L	A	F	A	S	E	.	.	I	R	R	V	N	K	P	.	.	.	X	V	I	A	A	N	K	A	D	A	A	S	D	E	Q	I	K	R	L	V	R	E	E	E	K	R	G	Y	I	V	I	P	T	S	A	A	A	E	L	T	L	R	K	A	A	K	A	G	F
Template Known Secondary structure			S		G	G	G													.	.						S		.	.	.								G	G	G	S															T	T																S		S	S	S
Template Predicted Secondary structure																				.	.								.	.	.
Template SS confidence
	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

	232	.	.	.	.	.	.	.	240	.	.																					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query Sequence	A	H	S	E	Q	L	E	G	V	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	P	D	E	P	S	A	R	H	A	L	P	A	N	E	P	R	I	V	L	N	N	G	V	V	S	Y	N	D	R	P	I	L	.	.	.	N	N	L	S	W	Q	V	N	P	G	E	H
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation
Template Sequence	I	E	Y	I	P	A	L	X	V	I	K	E	K	V	L	D	R	F	G	S	T	G	V	Q	E	V	I	N	R	V	V	F	D	L	L	K	L	I	P	V	Y	P	V	H	D	E	Q	F	G	N	V	L	P	H	V	F	L	X	K	K	G	S	T	P	R	D	L	A	F	K	V	H	T	D	L	G	K	G	F	L
Template Known Secondary structure			S				T	T							T	S	S	S	S	S		S											T	T	S									S					S		S	S								T	T																	T
Template Predicted Secondary structure
Template SS confidence
	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

	289	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence	W	Q	I	V	G	P	N	G	.	.	A	G	K	S	T	L	L	S
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence	Y	A	I	N	A	R	T	K	R	R	V	G	E	D	Y	E	L	Q
Template Known Secondary structure					T	T	T		S	B			T	T
Template Predicted Secondary structure
Template SS confidence
	368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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