Job Description P37903 Confidence 9.57% Date Thu Jan 5 11:57:44 GMT 2012 Rank 83 Aligned Residues 119 % Identity 24% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	I	L	V	P	I	D	I	S	D	S	E	L	T	Q	R	V	I	S	H	V	E	E	E	A	K	I	D	D	A	E	V	H	F	L	T	V	I	P	S	L	P	Y	Y	A	S	L	G	L	A	Y	S	A	E	L	P	A	M	D	D	L	K	A	E	A	K	S	Q	L	E	E	I	I	K	K	F	K	L	P
Query Conservation
Alig confidence																												.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	.	G	K	G	R	R	P	L	L	V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P
Template Known Secondary structure		S									T	T	S	S														.		T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S																T
Template Predicted Secondary structure																												.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.																						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		T	D	R	V	H	V	H	V	E	E	G	S	P	K	D	R	I	L	E	L	A	K	K	I	P	A	H	M	I	I	I	A	S	.	H	R	P	D	I	T	T	Y	L	L	G	S	N	A	A	A	V	V	R	H	A	E	C	S	V	L	V	V
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V
Template Known Secondary structure							T	T																		T		S										S	S																			S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions