 |
Job Description | P52696 | Confidence | 90.09% | Date | Thu Jan 5 12:06:00 GMT 2012 |
Rank | 191 | Aligned Residues | 65 |
% Identity | 11% | Template | d1mkma1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| Transcriptional regulator IclR, N-terminal domain
|
Resolution | 2.20 |
|
 |
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | |
|
|
. | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | S | M | K | A | F | V | I | L | A | E | S | S | . |
. |
. |
S | F | N | N | A | A | K | L | L | N | I | T | Q | P | A | L | T | R | R | I | K | K | M | E | E | D | L | H | V | Q | L | F | E | R | T | T | R | K | V | T | L | T | K | A | G | K | R | L | L | P | E | A | R | E |
Query Conservation |   |
  |   |
|   |   |
|   |   |
|   |   |   |   | . | . | . |
|   |
|   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|   |
|
|   |   | . |   |
|   |
|   |   |   |   |   |   |   | . |
|   |
|
|   |   |
|   |   |
|
|   |   |   |
|   |
Template Sequence |   |
K | A | F | E | I | L | D | F | I | V | K | N | P | G | D | V | S | V | S | E | I | A | E | K | F | N | M | S | V | S | N | A | Y | K | Y | M | V | V | L | E | E | . |
K | G | F | V | L | R | K | K | D | K | R | . |
Y | V | P | G | Y | K | L | I | E | Y | G | S | F | V | L | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
| S | S |
| B |
|  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | T | T | S |  |  |  |
| T | T | S |
| . |  |  |  |
| T |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
. | . | . | 50 | . | . | . | . | . | . | . | |
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|